Brassica rapa (field mustard): 103857797
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Entry
103857797 CDS
T03449
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A isoform X2
KO
K12856
pre-mRNA-processing factor 8
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103857797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103857797
Spliceosome [BR:
brp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
103857797
Complex C
U5 SnRNP specific factors
103857797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
103857797
NCBI-ProteinID:
XP_009133278
LinkDB
All DBs
Position
A01:complement(5776330..5786164)
Genome browser
AA seq
2361 aa
AA seq
DB search
MWNNNDGMPLAPPGTGVSMIPPPHPSYTSLPPPHPSNPTPPPVEPTPEEAEAKLEEKARK
WMQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFVP
HAVFKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYMAQWGTMWIMMRREKR
DRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVHTWFYDHKPLVKT
KLINGPSYRKWNLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMPSFFTAKALNMCIPGGP
KFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIGFPHLYNNRPRKVKLCVYHSPMV
MYIKTEDPDLPAFYYDPLLHPISNTNKERRERNVYEDDGEDDFTLPEGVEPLLKDTHLYT
DTTAAGISLLFAPRPFNMRSGRTRRSEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKCYV
LNELHHRPPKAQKKKHLFRSLAATKFFQSTELDWVEVGLQVCRQGYNMLNLLIHRKNLNY
LHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLA
DGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWR
VWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLD
AMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAH
YNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEALAIYTTTVH
WLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQREELGLIEQAYDNPH
EALSRIKRHLLTQRGFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHL
FPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTGDGQCVVMLQTKFEKFFEKIDLTMLNR
LLRLVLDHNIADYVSAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQFYGLLLDLLLLGL
TRASEIAGPPQMPNEFMTFWDTKVETRHPIRLYSRYIDKVHIMFKFTHEEARDLIQRYLT
EHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFV
SVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDD
EHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENK
IQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFR
SGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDR
GIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDV
IQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRF
TLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLC
QVLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHKWPMSKPSLVAESKDVFDQ
KASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSA
FGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSN
QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLG
QLAKWKTAEEVAALVRSLPVEEQPKQVIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQ
ACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLL
KPDKSVVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGA
EITPPSQQRQQIAEIEKQAKEASQINAVTTRTTNVHGEELIVTTVSPYEQTAFGSKTDWR
VRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNVLKKFICIADLRTQIAGYLYGISPP
DNPQVKEIRCVVMVPQWGSHQHLNLPSALPEHEFLNDLEPLGWLHTQPNELPQLSPQDVT
SHSRILENNKQWDGEKCIILTCSFTPGSCSLTSYKLTQTGYEWGRLNKDTGGNPHGYLPT
HYEKVQMLLSDRFLGFYMVPENGPWNYNFMGVKHTVGMKYSVKLGTPKEYYHEEHRPTHF
LEFSNMEEADIAEGDREDTFT
NT seq
7086 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacaacgacggtatgccgttagcccctcccggcaccggcgtctcgatgatt
cctccaccgcatccttcttacacttcccttcctccgccgcatccttctaatccgactcct
cctccggtcgagcctactcccgaggaagccgaggcgaagctcgaggagaaggcgcgcaag
tggatgcagctgaactcgaaacgctacggcgacaagaggaagttcggattcgtggaaact
cagaaggaggacatgccacctgagcacgtcaggaagattatcagggatcatggtgatatg
tcatcgaagaagtttcgtcacgataaacgtgtataccttggagctcttaagttcgttcct
cacgcggtcttcaagctactggagaatatgcctatgccttgggagcaggttcgagatgtt
aaggttctgtaccacattaccggagctattacattcgttaacgagattccatgggttgtg
gaacctatttacatggctcagtggggtactatgtggattatgatgcgaagggagaagagg
gatcgtcgtcatttcaagaggatgcggtttccaccgtttgatgatgaggagcctccactg
gactacgcagacaacttgttggacgttgatcctcttgagccaattcagttggagctcgac
gaggaagaagattctgctgtgcacacttggttctatgaccacaagccactagtaaagacc
aaactgattaatggtcccagttacaggaagtggaatctctctcttccgattatggctacc
cttcacaggcttgcgggccagttgttgtcggatttgatcgatcgcaactacttctacttg
tttgacatgccgtcattcttcaccgccaaggctctgaacatgtgcatacctggtggtcct
aagtttgagcctttgtaccgtgatatggagaaaggggatgaagactggaatgagtttaac
gacatcaacaagcttatcattcgttcccctcttcgaactgagtacagaataggttttcct
cacctgtacaacaatcgtcccaggaaagtcaaactctgtgtgtatcacagtcctatggtg
atgtatataaagacagaggatcctgatcttcctgccttttattatgatccgttgcttcac
ccgataagcaacaccaataaggaaaggcgtgaaaggaacgtttatgaagatgatggtgag
gatgacttcaccttaccagagggagtggaacctttgctaaaagacacccacctctacact
gacactacagctgctggcatttcgttgctgtttgccccacgacctttcaatatgaggtct
gggagaacaaggcggtcagaagatattcccctggtgtcagagtggttcaaggagcactgt
cctccagcttatcctgttaaagttcgagttagttaccaaaagcttttgaagtgctatgtt
ctgaatgagttgcaccatagaccacctaaagcccagaagaagaagcacttattccgctct
cttgcggctacaaagtttttccaaagtactgagttggattgggttgaagtgggtctgcaa
gtctgcaggcaggggtataatatgctgaacctgctgatccacaggaagaatttgaactac
ctgcaccttgactacaacttcaacctgaagcctgttaaaacattgaccaccaaagagcga
aagaagtcgcgttttgggaacgctttccatctctgccgtgagatcctccggctgacaaag
cttgtagttgatgcaaatgtccagttccgacttggaaatgttgatgctttccagttggct
gacggtctgcagtatattttctcccatgttggtcagttgacgggtatgtatcgttataaa
tacagactgatgaggcagattaggatgtgcaaggatttgaagcacttgatatattaccgt
ttcaataccggtcctgttggtaagggaccagggtgtggattttgggctccaatgtggagg
gtatggttgtttttccttcgtggaatagttcctcttcttgaacgatggttagggaatctg
cttgctcgtcagtttgaggggcgtcattcaaaaggagttgccaaaactgtcacaaaacag
agagttgaaagccacttcgatttggaactgcgcgctgctgtcatgcatgacgttcttgat
gccatgccagagggtatcaagcaaaacaaagctcggacaatattacagcacctcagcgag
gcatggcgatgttggaaagctaatatcccgtggaaggtccctgggttgcccgtgccaatt
gagaatatgatcctgcgttatgtcaagtctaaggctgattggtggacaaatgttgctcac
tacaatcgtgagcgtatcagaagaggggctactgttgataagaccgtttgtagaaagaat
ctgggaaggttgacacgactttggctaaaggcagaacaggaacggcagcacaattacctg
aaagatggtccatatgtcactccagaggaagcactagcaatttatacaacaactgtccat
tggttggaatcgaggaaattttctccaattccattcccgccactgtcttacaaacatgac
acaaagttgcttatcctggcccttgagagactgaaggaatcatacagtgttgccgtgagg
ttgaatcagcagcagcgagaggagcttggtctgatagaacaagcgtatgacaatcctcat
gaagctctgtcacgaattaaacgtcatcttctcacccagcgcggcttcaaagaggttggc
atagagtttatggatctatacagctacctgattccagtttatgagatagagcctctggag
aaaattactgatgcctaccttgaccaatacttgtggtacgagggtgataagcgccacttg
ttcccaaactggatcaagccagcagactcagagccgccaccacttctggtttacaagtgg
tgtcaaggtatcaataatttacaaggcatatgggacacaggagatgggcaatgtgtggtg
atgctccagactaagtttgaaaaattctttgaaaagattgatttgaccatgttgaacagg
ctgcttcgtttggttcttgaccacaatattgcggattatgtgtctgccaagaataacgtg
gttctgtcttacaaagatatgagtcatactaactcgtatggtctgattaggggacttcag
tttgcatcttttgttgttcagttttatggactattgcttgatctgttgcttcttggtttg
actcgggcaagcgaaattgctgggccaccacagatgcctaacgagtttatgacgttttgg
gatacaaaagtggagacacggcatcccataagactgtattctcggtatatagacaaagtt
catataatgttcaaatttacccatgaagaagccagggatcttattcagcgctatcttact
gagcatcctgatcccaacaatgaaaacatggtgggatacaacaataagaagtgctggcca
agagatgcaaggatgaggttgatgaaacatgatgtcaatcttggtagaagtgtcttctgg
gacatgaagaatcgtcttcctcggagcatcacaactttggagtgggagaatggctttgtc
tctgtctacagcaaggataatcccaacctgctcttcagcatgtgtggatttgaagttcgc
atacttccaaaaatcaggatgactcaggaagctttcagcaacacaagagatggtgtctgg
aatctgcaaaatgagcagaccaaggagaggactgccgttgcttttctgcgagttgatgat
gaacatatgaaggtgtttgagaatcgtgtgaggcagatccttatgtcttcaggatcaacc
accttcaccaaaattgtcaataaatggaatacagctttaattggtctcatgacttacttt
cgtgaagccactgtgcatacgcaagagctcttggatctactggtcaagtgtgaaaacaaa
attcaaacgaggattaagatagggctgaactcaaagatgcctagtcggtttcctccagtt
atcttctacactccaaaggaaattggtgggctgggaatgttgtcaatgggtcatattttg
attccccaaagtgaccttcggtacagcaagcagacagatgttggggtaacccactttagg
agtggaatgagccatgaggaagatcagcttataccaaatctatatcgttacatacagcca
tgggagagtgagtttattgattcacagcgggtgtgggcagagtatgctttaaagcggcag
gaagcacaggcccaaaataggcgtcttacattggaggatttggaggactcttgggatagg
ggaattcctcgaataaataccctctttcagaaggataggcacacgttagcgtatgataaa
ggttggagggttcgaaccgactttaagcagtaccaagtcctcaagcaaaatcctttctgg
tggacgcaccagagacatgatgggaagctgtggaatttaaacaattaccgaactgatgtt
atccaagctcttggaggtgttgagggtatccttgagcacactttattcaaggggacatat
ttcccaacatgggagggtcttttctgggagaaggcatctgggtttgaggagtcgatgaaa
tataagaagctgacgaatgcacagaggtctggtctgaaccagattccaaatagaagattc
acgctttggtggtcgccaacaataaatcgagcgaatgtttatgtgggtttccaagtgcag
ttggatctgacaggaatttttatgcatggaaagattcctacactgaagatatctctgatt
cagattttccgtgcccatttgtggcaaaagatccatgagagtgttgttatggatctttgt
caagtattggaccaagagttggatgctttggagattgaaactgttcagaaggagacaatt
catccaaggaagagttataagatgaacagctcttgcgctgatgttcttctgtttgctgcc
cataaatggccaatgtcaaaaccaagcctggttgctgagtcaaaggatgtgttcgaccag
aaagctagcaacaagtattggatagacgtgcaacttcggtggggagattatgattcccat
gatattgagcgttatactcgggccaaattcatggattatacaactgataacatgtcaatc
tatccatctccaacaggtgtaatgattgggcttgatttggcatacaatttacattctgcc
tttggcaattggttcccaggttctaaacctcttcttgctcaagcgatgaacaagatcatg
aagtctaatccagctctgtacgtgttgagagagaggataaggaaaggtttgcaattgtac
tcatctgagcctacagagccatatttgtcatcgcaaaactatggtgaaatattcagcaat
caaattatatggtttgtcgatgataccaatgtctaccgtgtcacaattcacaagacattt
gaaggaaatttaacaacgaagcctatcaatggtgcgatctttatttttaatccaagaact
gggcagctattcctgaaggttatccatacaagcgtttgggctggtcagaagcgtcttggt
cagctagctaaatggaaaactgctgaagaggtggctgcccttgtgcggtctctccctgtt
gaagaacagccaaaacaagttattgttactcgcaaaggaatgctcgatccccttgaggtc
cacttactggatttccccaacattgttatcaagggaagtgaactgcagcttccgttccag
gcgtgccttaagattgagaaatttggtgatctgattttgaaggccacagaaccacagatg
gtcctattcaatatctatgatgattggttgaagagtatctcttcgtacactgccttttca
agactcattctgatccttcgtgcgcttcacgtgaataatgagaaggctaagatgttgttg
aagcccgacaaatctgttgtcactgagccacatcacatctggccctctctcactgacgac
cagtggatgaaggtggaggtagctcttagggatcttatcctatctgactacgcaaagaag
aacaatgtgaatacctcagctctgacgcaatcagagatcagagatattatccttggagct
gagattaccccaccctctcaacagaggcaacagatagctgagattgagaaacaggcaaaa
gaagccagccagattaatgctgtcacaaccagaacgacaaatgttcatggtgaggagctc
attgtcactactgttagcccctacgagcaaactgcattcggttccaaaacagattggcgt
gtgcgtgcaatatcagctaccaacctctacctcagagtcaatcacatctacgtgaactcg
gatgacataaaggagaccggatacacatacatcatgccaaagaacgtcctgaagaagttc
atatgcatagcagatcttcgcactcaaattgctggatatctctatggtataagcccccct
gataatccccaggtgaaggaaatccgttgtgttgtgatggtgccgcagtggggaagtcat
cagcaccttaacctgccgtcagctcttcctgagcatgaattcttaaatgatctcgagcca
ttgggatggctgcacacacaacctaacgagctccctcagttgtcaccacaagatgttacc
tctcattcccgcattctggagaacaacaagcaatgggatggagaaaaatgtatcatcctg
acatgcagtttcacaccgggatcctgctctttgacatcatataagttgacccaaaccgga
tatgagtggggacgtctcaacaaggacacaggcggcaatcctcatggctaccttcccacc
cattatgagaaggttcaaatgctattgagtgaccggttcctcgggttttacatggttcct
gagaacggaccgtggaactacaactttatgggagtgaagcacacggtggggatgaaatac
agcgtcaaacttggaaccccaaaggagtactatcacgaggaacatcgacccactcatttc
ctggagttcagcaacatggaggaggctgacatcgctgagggagatcgtgaagacaccttt
acttga
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integrated database retrieval system
