Brassica rapa (field mustard): 103857956
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Entry
103857956 CDS
T03449
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
brp04131
]
103857956
04121 Ubiquitin system [BR:
brp04121
]
103857956
Enzymes [BR:
brp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103857956
Membrane trafficking [BR:
brp04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
103857956
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103857956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-rbx1
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-ANAPC11
zf-RING_5
zf-RING_16
zf-Nse
Prok-RING_4
zf-HC5HC2H
HypA
Rad50_zn_hook
VPS18_RING_C
DZR_2
Motif
Other DBs
NCBI-GeneID:
103857956
NCBI-ProteinID:
XP_009133459
UniProt:
M4C7M9
LinkDB
All DBs
Position
A03:10354575..10356539
Genome browser
AA seq
317 aa
AA seq
DB search
MSSGGNTHWCHRCQRAVRLHGRDPVCSYCGGGFVELLEIPQASPFDMFRSHRDVVERDPT
FDLMDALSDFMRNRETRGRSISSGPENFPGLAPLLIFGGQVPYRLSGVEALFNGGSPGIG
ITRGNNTGDYFFGPGLEELFEQLSAGTTTRRGPPPAPRSSIDALPTIKIAQRHLRSSDSN
CAVCKDEFELGTEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPSGRGSSSSQNRTTT
RNNRSSSSSSGNSRESSNERRNPFSSFWPFRSSGSTSNSTQNRGGTRNSDGTDENHNYHQ
QQQQQSHMGYGGWPFDY
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcggtggaaacacccactggtgccatagatgccagcgtgctgtcaggctacac
ggacgagaccctgtatgttcttattgtggaggagggtttgttgagctgcttgaaatccct
caagccagcccatttgatatgttcagatctcacagggacgttgtggaacgtgatcctact
ttcgatctcatggatgctttgtccgactttatgaggaaccgagaaaccagaggaagatcc
atcagctctggtcctgagaacttccctggtctggctcctttattgatctttggtggtcag
gttccttacagactatctggagtcgaagcactcttcaatggcggctcaccaggcatcggc
atcacacgtggtaacaacactggtgactatttcttcggtcctggtcttgaagagctcttt
gagcagctttcagctgggactactactcgcagaggaccaccacctgctcctagatcttca
atagatgcattgcctaccatcaagatcgctcagaggcatcttaggtcttcggactccaac
tgtgctgtgtgtaaagacgaatttgaattgggaacagaagcgaaacagatgccttgtaac
cacatctatcattctgactgcattgtcccgtggctggttcagcataactcatgtccggtc
tgtcgccaagagctaccatcaggtagaggatcttcgagtagtcaaaacagaaccaccacc
agaaacaacagaagtagtagtagtagtagtggtaatagccgtgagagcagcaatgaaaga
aggaatcctttctcttccttctggccatttcgttcgtctggttcaacctcaaactccaca
cagaaccgtggagggacaagaaactcggatggaaccgatgagaatcataactaccatcag
cagcaacagcaacagtcacatatgggttatggtgggtggccttttgattactaa
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