Brassica rapa (field mustard): 103857992
Help
Entry
103857992 CDS
T03449
Name
(RefSeq) ABC transporter A family member 1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
brp
Brassica rapa (field mustard)
Pathway
brp02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
103857992
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
brp02000
]
103857992
Transporters [BR:
brp02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
103857992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
SMC_N
Tmemb_170
AAA_22
RsgA_GTPase
AAA_29
Motif
Other DBs
NCBI-GeneID:
103857992
NCBI-ProteinID:
XP_009133505
LinkDB
All DBs
Position
A03:complement(10579395..10591816)
Genome browser
AA seq
1876 aa
AA seq
DB search
MGTWRRQLKAMLRKNWLLKTRHPFVTSAEILLPTVVMLLLIAVRTRVDTTIHPARSNIEK
DTVVQVGEGISPSFPQVLELLLADGEFLAFAPDTDETNNMIDILSLKFPDLRLVTRIFKD
DVELETYITSAHYAVCSDVRNCSNPKLKGAVVFHEQGPHVYDYSIRLNHTWALAGFPNVK
SIMDTNGPYINDLEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQNMDLPSSHASLGS
ALSLEMPWTMFSPSKIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPISRLISYSVF
EKEQKIREGLYMMGLKDEIFHLSWFITYALQFALCAGIITACTMGSIFKYSDKTLVFTYF
FLFGVSSIMLSFLISTFFTRAKTAVAVGTLAFLGAFFPYYTVNDESVSMVLKVVASLLSP
TAFALGSINFADYERAHVGLRWSNIWLASSGVSFFVCLLMMLLDSILYCAIGLYLDKVLP
RENGVRYPWNFIFNKCFGRKKNNQYCIPGLNTNIEGTQGEPFDPVIESISLEMRQQELDG
RCIQIKNLHKVFASGRGNCCAVNSLRLTLYENQILSLLGHNGAGKSTTISMLVGLLPPTS
GDALILGNSIVTNMDEIRKELGVCPQHDILFPELTVREHLEMFAVLKGVKEDSLKSTVTD
MAEEVGLSDKINTLVRALSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLI
KKIKKGRIILLTTHSMDEAEELGDRIGIMANGSLKCCGSSMFLKHHYGVGYTLTLVKTSP
AVSVAAHIVHRHIPSATCVSEVGNEISFKLPLASLPCFENMFREIESCMKSSVDRSRISE
IEDSDYPGIQSYGISVTTLEEVFLRVAGCNLDIEDKQEDTFASPDTEASLVCIESVQKST
IQPKLLASCNEGAGVIITSIAKACRLIVAAVWAFIGFISMQCCGCSVISRSMFWRHCKAL
FIKRARSAFRDRKTVAFQLIIPAVFLLFGLLLLQLKPHPDQKSITLTTAYFNPLLSGNGG
GGPIPYDLSEPIAKEVAEYIEGGWIQPLRNSSYKFPNPKEALADAIDAAGPTLGPTLLSM
SEFLMSSFDQSYESRYGAVLMDSQHPDGSVGYTVLHNSTCQHAGPIYINVMHSALLRLAS
GNKNMSIQTRNHPLPPTKTQRLQRHDLDAFSAAIIVSIAFSFIPASFAVPIVKEREVKAK
HQQLISGVSVLSYWLSTYVWDFVSFLFPSTFAIILFYAFGLEQFIGIGRFLPTVLMLLEY
GLAIASSTYCLTFFFTEHSMAQNVILMVHFFSGLILMVISFVMGLIPATVNANSYLKTFF
RLSPGFCFSDGLASLALLRQGMKDKSSHGVFDWNVTGASISYLALESIFYFLLTLGLELL
PVQKMMSFSIGEWWQNFKVFKQGAGSSSTEPLLKDSTGAISADMEDDIDVQEERNRVISG
LTDNTIFYLQNLRKVYPGSNHHGPKVAVQSLTFSVQAGECFGFLGTNGAGKTTTLSMLSG
EETPTSGTAFVFGKDIVASPKAIRQHIGYCPQFDALFEYLTVKEHLELYARIKGVVDYRI
DNVVMEKLVEFDLLKHSHKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPVAKR
FMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHL
ELEVKPNEVSHVDLENLCQMIQQWLFNVPSQPRSLLGDLEVCIGVSDSITPDTASASEIS
LSPEMIQSIAKYLGNEQRVSTLVPPMPEEDVGFDEQLSEQLFRDGGIPLPIFAEWWLTKE
KFSALDSFIQSSFPGATFKSCNGLIIKYQLPFGEGGLSLADAFGHLERNRNRLGIAEYSI
SQSTLETIFNHFAANS
NT seq
5631 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatggaggaggcagctaaaggctatgctccgcaagaattggctcctcaaaact
cgccatccctttgttacttctgccgagattttgcttccgactgttgtaatgttgctgttg
attgccgtgaggacacgcgttgacaccacaattcaccccgctcgctcgaatatagagaaa
gacacggtggtccaagtcggcgaaggtatctctcccagttttcctcaagttttggagctt
ttgcttgctgatggggagttcttagcttttgcacctgacaccgatgaaacaaataacatg
atcgacattctctctctaaagtttcctgatctgcggctggttactagaatttttaaagat
gacgttgagctggaaacctatataacctctgcgcattatgctgtctgcagcgatgttagg
aattgttcgaatccaaaactaaaaggagcagtggttttccatgaacaaggacctcatgta
tatgattatagcatccgcttgaaccacacatgggcattggcaggattccctaatgtcaag
tcgatcatggacacaaatggaccttatatcaatgatctggaaatggggattaataccata
ccaacaatgcaatacagcttcagcggattcttgactcttcagcaggtggtagactctttc
attatatttgcctctcagcaaaacatggacttgccatcatcacatgcatctcttggttca
gcgttatcccttgagatgccatggactatgtttagcccctcaaagataagaatggttcca
tttccaacccgcgaatacactgatgatgagttccaatctattgtcaaaagcgtaatgggc
ttgttgtaccttctgggatttctgtttccaatctcccggcttatcagctactctgtcttt
gagaaggagcagaaaataagagaaggactttacatgatgggcttgaaagatgagattttc
catttgtcgtggtttatcacatatgcattgcagttcgcattgtgcgctgggattattaca
gcttgtacgatgggaagtatctttaagtatagtgataagacattagtcttcacatacttc
tttttgtttggagtcagctcaataatgctctcatttctaatatcaacatttttcactcga
gctaagacagctgtcgcagttgggaccttggcctttctcggagccttcttcccttattac
actgttaacgatgaatctgtgtccatggtactgaaagttgttgcgtctttgctttcacct
actgcatttgctcttgggtcaatcaactttgctgattacgagcgtgcacatgttggactt
cgttggagcaacatatggctggcatcgtctggagtaagtttttttgtctgcctcttgatg
atgctgctcgactctattctgtactgcgctattggcctttatctggacaaggtccttccc
agggaaaatggtgtacggtacccatggaactttatcttcaacaagtgctttgggaggaag
aaaaacaaccaatattgcattccaggtctcaacactaatatagagggtactcagggagag
ccttttgatcctgttatcgaatcaataagcctggaaatgaggcaacaagagcttgatggg
aggtgcatacaaattaaaaatctgcataaggtctttgcttcaggaaggggaaattgctgt
gcagttaattcattgcgactaacattgtacgagaaccagatactttcacttctgggccat
aatggggctggtaaaagcacaacaatatcaatgcttgtcggccttcttcctccaacttct
ggagatgccctgatacttggaaacagtatcgtcacaaatatggatgaaatacgaaaagaa
ctaggtgtttgccctcagcatgacatcctctttccggaactgacagttagagaacacttg
gagatgtttgcggttcttaaaggtgttaaggaagattccttaaagagcacagttactgat
atggcagaggaagtggggttgtctgataaaattaatacactagtgcgggcactttccgga
ggcatgaaaaggaaattatcacttggaatcgcattgataggaaacagtaaggtgattatt
ctcgatgaaccaaccagtggaatggatccctactcaatgcgtcttacatggcagttgatt
aagaaaattaaaaagggcagaataatattgctaacaacccattccatggatgaagctgaa
gaacttggagatcggatagggatcatggctaacgggtcccttaagtgttgtggcagctcg
atgttcctgaagcatcactacggggttgggtacactctgacgctagtaaagacttctcca
gctgtctctgttgccgcacatatagttcatcgtcacattccatcagcaacctgtgtgagt
gaggtgggaaacgaaatctctttcaagcttcctttggcatccttgccttgctttgaaaat
atgttcagagaaattgagagttgcatgaagagttctgttgacagatctaggattagtgag
attgaggattcagattatcctggtattcagagttatggtatatctgtgacaacacttgaa
gaggtgtttctgagagttgctggctgtaacttagatatcgaggacaagcaggaagacaca
tttgcttctcctgataccgaggcttctttggtgtgcattgagtctgttcagaagagcact
atccaacccaaattactagcaagttgtaatgagggcgctggagttattattacctcaatt
gcaaaagcttgcagattaatcgttgctgcagtttgggcttttattggattcattagcatg
cagtgttgtggttgttccgttatctcaaggtcaatgttttggcggcattgcaaagcattg
ttcataaaaagagcaagatctgcttttagagaccgcaaaacagtggcgttccagctcatc
atcccagcagtattcttactttttggccttcttttactacagctcaagccacatcctgat
caaaaatccattacgttgacaactgcctattttaatcctctactgagtggcaatggaggt
ggtggtccgattccttatgatctatctgagccaattgccaaagaggttgcagaatatatt
gaaggaggctggattcagcccttgaggaatagttcatataagtttcctaatccaaaagag
gcattggctgatgcaattgatgcagcaggtcccacgttgggccccactctactttctatg
agcgaatttctgatgtctagttttgatcagtcatacgagtcaaggtatggggcagtttta
atggatagtcagcatccagatgggagtgtaggctataccgtgttacacaacagtacttgc
cagcatgctggtcctatctacatcaatgttatgcattctgcgcttctccgacttgctagt
ggtaacaagaatatgtcaattcaaactcgaaaccatcctttgcctccaacaaaaactcag
cgcttacagcgtcatgatttggatgccttttccgctgcaattattgttagcattgcattc
tcattcatcccggcctcatttgcagttcccattgttaaggagcgagaggtgaaagcgaag
caccaacagcttattagtggggtttctgttctttcatactggttatcaacgtacgtatgg
gatttcgtcagtttcttatttccgtcaacatttgcaataatcctcttctacgcctttggt
ctggagcagtttatcggaataggtcggtttctgccaactgtcctgatgctcctggagtat
ggcttagcaattgcatcatcaacgtattgtcttacatttttcttcaccgagcatagcatg
gctcagaatgttattcttatggtccacttcttctctggtcttatattaatggttatctca
tttgtcatgggccttattccagcgactgtgaatgcaaactcatatctaaagaccttcttt
agactatcaccaggattttgcttctctgatggattggcttcattagctcttctaaggcag
gggatgaaagacaaatccagtcatggggtgtttgattggaatgtcactggagcatccatc
tcatacctagctttggagagtatattctacttccttttgacgcttgggcttgagctcttg
cctgttcaaaagatgatgtctttctcaattggggagtggtggcagaattttaaagttttc
aagcaaggtgctggttctagttctacagagccgcttctcaaggattcgactggagccatt
tccgctgatatggaggatgacatagacgtgcaagaggaaagaaacagagtgatttcaggg
ttgacagacaacaccatattctacttacagaacctgagaaaggtctatcctggttccaat
catcacggcccaaaagtagctgtacagtctttgactttctcggtccaagcaggagaatgt
tttggctttttagggacgaatggagctgggaagactactaccttgtctatgttatctgga
gaagaaacaccaaccagtggaactgcctttgtctttggcaaagacatagtagcgagtccc
aaagctatccgtcagcatattggctactgcccccagtttgatgctttattcgagtatttg
actgtgaaggagcaccttgaactttatgcaaggatcaaaggagtggttgactatagaatt
gataatgtggttatggaaaagctagtcgagtttgacttgttgaagcattctcacaagcca
tcgttcactcttagcggcggaaacaaacgcaaactatccgttgctattgcaatgattgga
gatcctcccatagtcatacttgatgaaccatctacaggtatggatcctgttgccaaaaga
ttcatgtgggatgtgatatcccgcctgtcgacaaggagtggaaagacagcggttattctg
actactcatagcatgaatgaagctcaagcgctttgcactaggatcgggatcatggttgga
ggccgcctgagatgcataggtagtccacaacacttaaagacacgcttcggaaaccacctt
gagttagaggtcaaacccaacgaagtaagccatgtggacttggagaacctttgccagatg
attcagcagtggctgtttaacgttccttctcagcctagaagtttgcttggtgacctcgaa
gtatgtatcggtgtctctgactctattactcctgatacggcttcagcatcagaaatcagt
ttgtcaccagaaatgatacaaagcattgccaagtatctgggtaatgagcagagagtgagt
actcttgtacctcccatgcctgaggaagatgttggattcgatgaacagttatcagaacag
ctctttcgagatggtggtattccgttgccaatatttgccgagtggtggcttaccaaagaa
aagttttcagcattagattctttcatacaatcttcgtttccaggtgcaacatttaagagc
tgcaatggattgatcattaaataccagttgccatttggagaaggaggattgtcacttgca
gatgcctttggacaccttgaaagaaacaggaaccggttgggaatagctgaatacagcata
agtcagtccacacttgagaccatattcaaccattttgcagctaactcataa
DBGET
integrated database retrieval system
