Brassica rapa (field mustard): 103858239
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Entry
103858239 CDS
T03449
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103858239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103858239
03009 Ribosome biogenesis [BR:
brp03009
]
103858239
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103858239
Spliceosome [BR:
brp03041
]
Complex A
U2 snRNP components
U2 related factors
103858239
Complex B
103858239
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
103858239
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
90S particles
Helicases
103858239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
nSTAND3
T2SSE
SRP54
AAA_30
AAA_7
SLFN-g3_helicase
NACHT
UvrD-helicase
AAA_29
Motif
Other DBs
NCBI-GeneID:
103858239
NCBI-ProteinID:
XP_009133805
UniProt:
M4C8B7
LinkDB
All DBs
Position
A03:complement(12008995..12012188)
Genome browser
AA seq
723 aa
AA seq
DB search
MGTERKRKVSLFDVMEDPSAKNNKSNVLGAASAAAGINKWNGKPYSQRYYDILEKRRDLP
VWLQKDEFLRTLQSSQTLILVGETGSGKTTQIPQFVLDAVEAENTNKHKKWLVGCTQPRR
VAAMSVSRRVADEMDVAIGEEVGYSIRFEDCSGPRTMLKYLTDGMLLREAMADPLLERYK
VIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGR
LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDVLVFLTGEEEIEDACRKINKEVSNL
GDQVGPVKVVPLYSTLPPAMQQKIFDPAPEPLTEGGPAGRKIVVSTNIAETSLTIDGIVY
VIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNL
TRTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKS
KFGHIDGDHLTLLNVYHAYKQNNEDPNWCFENFVNNRAMKSADNVRQQLVRIMSRFNLKM
CSTDFNSRDYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVI
YNEYVLTTRNFIRTVTDIRGDWLVDVAPHYYDLSNFPNCEAKRVLEKLYKKRERERNESK
NRK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagcggaaggttagcttgttcgacgttatggaagatccatcggcg
aagaacaacaaatccaacgttctcggagctgcttcggcggcggctggtatcaacaaatgg
aacgggaagccttactcgcagaggtactacgatattctcgagaagaggagagatcttccc
gtttggctgcagaaagatgagtttctccgcacgttgcaatctagccagacgctgatcctc
gtcggtgagactgggagtggtaaaactactcagattccacagtttgttttagatgccgtt
gaggctgagaacacaaataagcataagaaatggttagttggctgcacgcagcctcgtaga
gtcgctgcaatgtctgtttctcgtcgtgttgctgatgaaatggatgttgccattggagaa
gaagttggttacagcatccgttttgaggactgtagtggccctcgtactatgctcaaatat
ttgactgatggtatgctgttgagagaggcaatggcggatccgcttctagagagatacaaa
gttattattctcgacgaagctcacgaaagaactttggctactgatgttctctttggtctt
ctcaaagaggttttgaggaacagacctgaccttaagctagttgtgatgagtgcaaccttg
gaagctgaaaagtttcaggagtattttagcggtgctcctcttatgaaagtccctggtagg
cttcatccggttgagatattctacacacaggagcctgagagggactatcttgaagctgcg
ataaggaccgttgttcagatacatatgtgcgagccgcctggagatgttcttgttttctta
actggagaggaggagattgaagatgcctgccgtaaaatcaataaagaggtcagtaacctt
ggagatcaagtgggacctgtcaaagttgtgccattatattctactctcccacctgcgatg
cagcagaagatttttgaccctgcacccgagccattaacagaaggtggtcctgctggtaga
aagatcgttgtctcaaccaacatcgctgaaacgtctttaaccattgatgggattgtttat
gttattgaccctggttttgccaagcagaaagtctataacccacggatccgtgttgagtcg
ttgttggtgtccccaatatcaaaggcaagtgctcaccagaggtcaggtcgtgctggtaga
actcgccctggaaaatgtttcaggctctacacagagaagagtttcaacaatgatctgcag
ccgcagacgtatcctgagattttgagatcaaatcttgctaatactgtcttgacattgaaa
aagttgggtatagacgacttggtgcactttgatttcatggaccctcctgctcctgagaca
ttgatgagagcattagaggttttgaattatctgggagcgttggatgatgaaggtaacttg
acaaggactggcgagataatgagtgagtttcccttggatccacagatgtcaaagatgctc
attgtcagccctgagttcaactgttcaaatgagattctctcagtttctgcaatgttatca
gtaccgaattgctttgttcggcctagagaggctcaaaaagcagcagatgaagcaaaatct
aaatttggacatattgatggagatcacctgacgcttctgaacgtgtaccacgcctacaag
caaaacaatgaagacccaaactggtgttttgagaactttgtgaacaatagagcaatgaag
tctgcagacaatgtgaggcagcagctagtgagaataatgtcgaggtttaatctcaagatg
tgtagcacggatttcaacagtcgtgactactacgtcaatatcagaaaggccatgctgtct
ggttatttcatgcaggtggctcacctagaacgcactggccattacttgaccgtcaaagat
aaccaagtggttcacttgcatccatccaattgcctggatcacaaaccggagtgggtgatt
tataatgaatatgtcttgactactcgcaatttcattcgcactgttacagatatccgcggt
gactggttagtagatgttgcaccgcattactatgatctttccaacttccccaactgtgaa
gcaaaaagagtccttgagaagctttacaagaagagagagagggaaaggaacgagagcaag
aaccgaaagtga
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