Brassica rapa (field mustard): 103858305
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Entry
103858305 CDS
T03449
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
brp04131
]
103858305
Membrane trafficking [BR:
brp04131
]
Protein recycling
Others
EARP complex
103858305
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Xre_MbcA_ParS-like_N
Motif
Other DBs
NCBI-GeneID:
103858305
NCBI-ProteinID:
XP_009133883
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All DBs
Position
A03:complement(12309890..12318058)
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AA seq
1124 aa
AA seq
DB search
MQPNLFPFGSVLGNPFLFNGGDLSEGGGGGGGGFESSRLFFLLPLLLSQGQGMDLSKVGE
KFLSSVKSASSLGLLPSPPSSSDRPQIPARAAAAAAVARALAALPPDQRLSISSTATELS
SIYGNRPPPQDVEELEQGFYEEDFDPVRHILENVPDDQSDLAYFEKQATLRLVQLDRVAE
SLSHHVMEHHEVMVKGMNLVRELEKDLKIANVICKNGRRNLTSSMNEASRDLIVHTHSKK
KQALLDMLPILTDLRHARVMQSSLEDLVEEGNYCKAFQVLSEYLQLLDSLSEFSAIQEMT
RGVEVWLGRTLHKLDSLLMGVCQEFKEDSYIMVLDAYALIGDVSGLAEKIQSFFMQEVIS
ETHSVLKTVVGEDNSAATQFSRLTYSDLCIQTPESKFRQCLLRTLAVLFQLIYSYHQIMS
FTPEMKVEDLISTSSATTQKIDSVTDTSCDPQGGGLSSTMSSASIPSSTISAEESVGSET
SSPVQQASNSAIDESRDSGDTVSNGESPWYYLRKESAGFVSGTLQRGRRNLWQLTTSRVS
VLLSSPAASSTSIHQFLKNYEDLSVFILAGEAFCGFEVVDFREKLKAVCENYFTAFHRQS
MHALKMVLEKETWTRLPPDTVQAINFAGLVGDGAPLIISSRSASGSSRFPLSTDPSGNRS
GGFSYWLKSGNPFSAKLTYYREDQDYSSDSGAASEDQDYSSDVVNSKVRDRKGINGGSPV
SGDENEDLHADYIDEDSQLPRRSFTRSISRSSSSHLSTNDDLKAQTGSSLCLLRSMDKYA
RLMQKLELVNVEFLKGICQLFGVFFYFVYQVFGQENTNSGGKGVSNSSSHRLKSCLSRIS
QECEQWIKPQFSSSSPSSSLAFPNTVHSLADVTPSSPLNTTSGHVSGISFSLKERCAAVD
TVSLVARILHKSKAHLQSMLMSRNGSLVEDFFGQLVGSVPDLTEHLHRTTARILLHVNGY
VDRIANSKWEVKELGVEHNGYVDLMLGEFKHYKTRLAHGGIPQEVQNLLLEYGVEIFAET
LVEGLSRIKRCTDEGRALMSLDIQVLINGLQHFVPTNVKPKLQIVDTFIKAYYLPETEYV
HWARGHPEYTKGQVVGLVTLVATMKGWKRKTRLEVVEKIESAAA
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctaatctcttcccattcggctctgttttgggtaatccgttcctattcaatggc
ggagatctaagcgagggtggtggtggtggtggtggtgggttcgagagctctaggcttttc
ttcttacttcctctcttgttgtcccaaggccaaggcatggatttatccaaggttggcgaa
aagttcctcagctctgttaagtccgcttcatcccttggactcttaccctctcctccttct
tcctctgatcgccctcagattccggcacgtgctgctgctgctgctgctgttgctcgtgct
ttggctgcccttcctcctgatcagaggttaagtatctcttccaccgctacagagcttagc
tccatatatggtaacaggcctcctcctcaagacgttgaagagcttgaacaaggcttctac
gaagaggattttgatccggtgagacatattttggagaatgtgcccgatgatcaaagtgat
ctagcttattttgagaagcaggccaccctgaggttagtacagctggatagagtggcagaa
agtctgtctcaccatgttatggagcatcatgaagtaatggtgaaggggatgaatttggtt
agagaactggaaaaagatttgaagattgcaaatgtcatctgcaagaatggaagaaggaat
ttgacttcttctatgaatgaggcttcaagagatcttattgtacacactcattccaaaaag
aagcaagctcttctggacatgcttcctatactaactgatcttcgccatgcaagagtaatg
cagtcaagtcttgaagaccttgttgaagaaggaaactattgcaaggcatttcaagttctg
tctgagtatttgcagcttcttgacagtctctctgagttttcagctatccaagagatgacc
cgtggtgttgaggtttggttaggaagaactctgcataagctggattcacttttgatgggc
gtttgccaggagttcaaagaagatagttatataatggtcctcgacgcttatgcactgatt
ggtgatgtctctggtcttgcggagaagatacaaagcttcttcatgcaagaagttatctca
gaaacccactcagtgctaaagactgttgttggggaggataacagtgcagccacccaattt
agtagacttacatacagcgatctatgtattcagacaccagaatccaagttcagacaatgt
cttttgagaacactagctgtgctatttcaattaatatattcgtaccatcagataatgagt
ttcactccagaaatgaaggtagaagatttgatctcaactagttctgcaacaactcaaaag
attgattcagtgacagacacttcatgcgacccacagggtggtggtctctcttcaaccatg
agttcagcaagcataccttcttctaccatttctgctgaagaatctgttggaagtgaaacc
tccagtcccgtgcagcaagcgtctaatagtgcaatagacgagtctagggattctggagat
acagtatctaatggcgagtcaccatggtactatctacgaaaagagagtgctggttttgtt
tcaggaactctgcagagaggacgaagaaatctatggcaactcacaacaagccgtgtgtca
gttttgctctcatcgccagctgcttcttcaacaagtatacatcagttccttaaaaactat
gaagacctgagcgtctttatccttgctggggaagccttctgtggatttgaagttgttgac
tttagggagaagctaaaggctgtatgcgaaaattatttcactgcgtttcataggcaaagc
atgcatgcgcttaaaatggtcctggagaaggagacatggacgagattgccacctgataca
gtgcaagctataaattttgctggtcttgtgggggatggggctccccttattatttcttcc
cgaagtgcctctggttcttccagattccctctctcaactgatccgagtgggaacagaagt
ggtggattctcatattggctgaaaagtggaaaccctttctcagcaaagttaacttactat
agagaagatcaagactactcctcagacagtggagctgcctctgaagatcaagactactcc
tcagacgttgtgaattccaaggtaagagatagaaaaggcattaacggaggtagtcctgtt
tcaggagatgaaaatgaagaccttcatgctgactatattgatgaagatagtcagcttcca
agacgaagttttacacgtagtatatcaaggagttcttcttcacatttgagtactaatgat
gatttgaaagctcaaacaggatcgtcgctgtgccttctaagatcaatggataagtacgcg
aggcttatgcagaaacttgaactcgttaatgtcgaattccttaagggaatatgccaattg
tttggggtctttttctatttcgtgtatcaagtatttggtcaagagaatacaaattcaggt
ggaaaaggagtctccaactcttccagccatcgtttgaaaagctgcttatcccggatatca
caagagtgtgagcaatggataaaacctcagttttcatcatcatctccatcttcttcactt
gcttttcccaacacagttcatagtcttgcggacgtgactccttcaagtcccttaaataca
acatctggtcacgtatcaggcatatcttttagtctcaaggaaagatgtgctgcagtggac
actgtttctcttgtggctcgaatattgcataaatcaaaggctcatcttcaatcgatgctt
atgtcaagaaatggctccttggttgaagacttctttggtcaactggttggttccgtacct
gatctgacagagcacttacacaggacaactgcaaggatcctgctgcatgttaatggatat
gttgaccggattgctaattctaaatgggaagtcaaggagcttggagtggagcataatggg
tatgttgatttgatgcttggggaattcaaacactacaaaacaaggcttgcacacggaggc
attccacaggaagtccaaaacctcctactggaatatggcgttgaaatatttgcggagacg
ctggtggaaggtctatctcgaataaaaagatgcaccgatgaaggacgtgctctcatgtca
ttagatattcaggttctaataaacgggctacaacactttgtgccaacaaatgtgaaaccc
aagttacagatagtggacacatttatcaaggcatactatctaccagagacggagtatgtc
cactgggcaaggggtcatccggaatatacaaaaggacaggtcgtaggacttgtgacttta
gtagccaccatgaaaggctggaagaggaaaacgcggctagaagtagtggagaagattgaa
tcagctgctgcgtag
DBGET
integrated database retrieval system
