Brassica rapa (field mustard): 103858330
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Entry
103858330 CDS
T03449
Name
(RefSeq) structural maintenance of chromosomes protein 3 isoform X2
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
brp03036
]
103858330
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
brp00535
]
103858330
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
103858330
Meiosis-specific proteins
Cohesin complex and associated proteins
103858330
Proteoglycans [BR:
brp00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
103858330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_23
AAA_15
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
103858330
NCBI-ProteinID:
XP_009133908
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All DBs
Position
A03:12441663..12448734
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AA seq
1203 aa
AA seq
DB search
MYIKLVIIEGFKSYNEQTATEDFSRKVNCVVGANGSGKSNFFHAIRFVLSDIFQNLRNED
RNALLHEGVGHQVGSAFVEIVFDNSDNRIPVDKDEIRLRRAIGLKKDEYFLDGKHITKNE
VMDLLESAGFSRSNPYYVVQQGKIALLTMMKDSERLDLLKEIGGTRVYEEKRCESLKVMQ
DTGIKRSHIIQAVQYLDEKLRELDEEKEELRKYQQLDKQRKSLEYTIYEKELHDTREKLE
QTEDERTKASEESTKMYDRVEKAHDECRSLDESLAGLTKELQTMNKKKETVEALKTEAIT
KKAKLELDENDLKERIAGNIQSKNDALEQISMVEREMQDSLKELEVITPLYESQVDKEKQ
TTKRIMELEKKLNILYQKQGRATQFSDKANRDKWLRKEIKDLMRVLDSTMGQEQKLEDEI
FGLNTDLKERDAHIKNHEVEISELDTHISKSHEQFNIKKRERDEEHKKRREKWGEESQLS
SEIDKLKTELERAKKNLDHATPGDVRRGLISIKRICSEHKINGVFGPLVELVDCDEKFFT
AVEVTAGNSLFHVVVENDDISTKIIKHLNSRKGGRVTFIPLNRVNAPHVSYPQCSDAIPL
LRRLKFDSKFAPAFGQVFGRTVVCQDLNVATRVAKGDGLDCITLEGDQVSRRGGMTGGFY
DHRRSKLRLMNTIIQNMKSIDTKEKVLEDVRRQLQVIDQQITQIVTEQQRLESDWKHSRL
QVEQLKQEIANETKQKHAIHIALEHKEKSLGDVRIQMEQLRSSMAMKEAEMATELVDHLT
PEETEELSRLNPEIEDVKDKLIAFKTDRIETETRKAELETNLSTNLKRRIDELHATIASI
DDYSLPSSAGLETQELDDAKLLVEEFTNELQGLCRSIDEKTKQVKKIKDKKEKLKTLQDD
CEMKLQDANKKLEELFSLRNTLLSKQEEYRKKIMGLGPFSSESFDMYKQKNIKELQKMLH
GCSEQLQQFSHVNKKALDQYVNFTEQREELQKRKAELDAGDEKIKELITVLDQQQDESIE
RTYKMISFHFREIFSQFVQGGHGHLVMLKKTKKKDRDHDDEDGCGEAATERRVEKYDGVT
VKVSFTDQGETRSMKQLSGGQKTVVALALIFAIQKCDPAPFYLFDEIDAALDTQYRTAVG
NMIRGLADDSVSTQFITTTFRPELVKVADKMYGVFHKNNASIVKVISKEQALNFIQIDQS
HDT
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgtacatcaagctggttataatcgaaggtttcaagagttacaatgagcaaactgctact
gaggatttcagccgcaaagttaactgtgttgttggggcaaatgggtctgggaaaagtaac
tttttccatgcaattcgttttgtattgagtgacatcttccaaaatctgcgtaatgaagat
aggaatgcgttactccatgaaggtgttggtcatcaagttggatctgcgttcgtggagatt
gtctttgataattctgacaaccgcatccctgttgataaagatgaaattcgcttgcgccga
gctattggtctgaagaaggatgaatatttcttggatgggaaacacattacaaaaaatgaa
gttatggatttactggagagtgctggattttctcgttctaatccttactatgttgttcaa
caaggaaagatagccttgttgacaatgatgaaagattcagaacggctagatctgctaaaa
gagattggtggtacccgtgtttatgaggagaaacgctgtgagagtttgaaagttatgcag
gatacagggattaaacgaagtcatatcatccaagctgtccaatacttggatgaaaaacta
agggaactggacgaagagaaagaagaactcagaaaataccaacaacttgataagcagaga
aaatcactcgaatacaccatttatgaaaaagagcttcacgatactagggagaaactggaa
cagactgaagatgaaagaactaaagcatccgaagagtctacaaaaatgtatgacagagtt
gagaaggcccatgacgagtgcaggagcttagatgagtcgctggcaggactgacaaaggag
cttcagacaatgaacaaaaagaaagaaactgttgaagcactaaaaactgaagctattacg
aagaaggcaaaacttgagcttgatgagaatgatttaaaggaacggattgctggaaatatc
cagtcaaagaatgatgcacttgagcaaattagtatggtggaaagagaaatgcaggattct
ttgaaggaactagaggtgattactcctttatatgaaagtcaagttgacaaggagaagcaa
acgaccaaaagaatcatggagctggagaagaagcttaatattctttatcagaaacagggt
cgtgcaactcagttctcagataaggctaatcgagacaaatggctccggaaagaaattaaa
gatctcatgcgtgttctagactcaactatgggtcaagagcaaaaacttgaggatgaaatt
tttggcctcaatactgatttgaaggagcgtgatgcacacatcaagaaccatgaagttgaa
attagtgaactggacactcacatttccaagtcccatgaacaattcaatattaaaaagagg
gagagggatgaagaacataaaaaaagaagggaaaaatggggagaagaaagtcaactatct
tcagaaattgacaagttgaaaacggaacttgaaagggcaaagaaaaatcttgatcatgca
actccaggagatgtaaggcgaggactgatctctatcaaacggatttgctctgagcataag
atcaatggagtttttggtccacttgttgagctggttgattgcgatgagaagtttttcacc
gcagttgaagtcactgctggaaacagcctatttcacgtagtagttgagaatgacgacatt
tcaaccaagataattaaacacctgaattctcgaaagggtggacgtgtgaccttcataccc
ctgaatcgggtaaatgcacctcacgtaagctatccacaatgttctgatgcaataccactg
ctgaggagattgaagttcgactccaaatttgcaccagcatttggccaggtttttggtaga
acagttgtatgtcaagatctgaatgtagcaacaagagttgctaaaggtgatggcttggat
tgcataactttagaaggtgaccaggtgagcagaaggggtggcatgaccggtggattttat
gaccacaggcggtcgaaattgagattaatgaataccataatacaaaatatgaagtctata
gatacgaaggagaaggtgttggaggatgttagaagacagctgcaagtgatagatcagcag
atcacacagattgttactgagcagcagagacttgaatcagactggaagcatagcagatta
caggtggagcaactgaagcaagagatagctaacgagactaagcagaaacatgctatacat
atagcccttgaacataaggagaaatcactaggtgatgttagaatacaaatggagcagtta
agatctagcatggccatgaaggaagctgaaatggccacggaacttgtggatcacctaacc
ccagaagaaacggaagaattatcacgattaaacccagaaattgaggatgttaaggacaaa
cttattgcattcaagacagatcggattgagacagagacaagaaaagcagagttggagact
aatttgtctaccaacttaaagaggagaatagatgagttacatgctactatagcttccatc
gacgattatagtttgcctagttcagctggcttagaaacacaagaacttgatgatgcaaaa
ctattggttgaagagttcacaaacgagctccaaggtctctgtcgaagcattgatgagaag
actaagcaggtcaagaaaattaaagataagaaggagaagttaaagacattgcaagatgac
tgtgagatgaaattgcaagatgcaaataaaaagttggaggaactattcagccttcgtaac
acactcctttctaagcaagaagagtataggaagaagattatgggattgggtccattttca
tccgaatcttttgacatgtataaacaaaaaaatataaaggagctgcagaagatgctacac
gggtgcagtgaacagctgcaacagttcagccatgttaacaagaaagcgcttgatcaatat
gtaaatttcacagaacagcgagaagaacttcagaaacggaaagctgagcttgatgcagga
gatgagaaaataaaagaattgattacagttctggatcagcagcaagacgaatctatagaa
cgtacttacaaaatgatttcatttcacttccgggaaatattctctcagtttgtgcaaggt
ggacatggtcaccttgtcatgctgaagaagacgaaaaaaaaggaccgtgatcatgatgac
gaagatgggtgtggtgaagctgctacagagagaagggttgagaaatacgatggtgtaaca
gtgaaggtgtcgtttactgatcaaggggagacacggtcaatgaaacagttgtcgggagga
caaaagaccgttgttgctcttgcattaatatttgccatccagaaatgcgatcctgcaccg
ttctatctctttgatgagattgatgcggcacttgatactcagtatcgaactgctgtcggc
aacatgattcgtggtttagctgatgacagcgtaagcacgcagttcataaccacaactttt
cgtccggagctagtgaaagttgctgataagatgtatggagtgtttcataagaataatgcg
agtattgtaaaagttatttcaaaggaacaggcgttgaacttcatccagattgatcagtcc
catgatacttga
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