Brassica rapa (field mustard): 103858512
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Entry
103858512 CDS
T03449
Name
(RefSeq) DNA mismatch repair protein MLH1
KO
K08734
DNA mismatch repair protein MLH1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03430
Mismatch repair
brp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
103858512
03460 Fanconi anemia pathway
103858512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brp03400
]
103858512
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
103858512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mlh1_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
103858512
NCBI-ProteinID:
XP_009134134
UniProt:
M4C8Z6
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Position
A03:complement(13282748..13288085)
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AA seq
749 aa
AA seq
DB search
MTDCSPLAVAMEEEESTATAMDVEESPSTSIAPRDPPKIQRLEESVVNRIAAGEVIQRPV
SAVKELVENSLDADSTSISVTVKDGGLKLIQVSDDGHGIRREDLPILCERHTTSKLSKYE
DLFSLSSMGFRGEALASMTYVAHVTVTTITKGQIHGHRVSYRDGVMEHEPKACAAVKGTQ
IMVENLFYNMIARRKTLQNSADDYGKIVDLLSRMAIHHNNVSFSCRKHGAVKADVHSVVS
SSRLDSIRSVYGVSVAKSLIKVEVSSGESSGCAFDMEGFVSNSNYVAKKTILVLFINDRL
VECSALKRAIEIVYAATLPKASKPFVYMSINLPREHVDINIHPTKKEVSLLNQEIMIEMI
QSEVELKLRNTNDTRTFQEQKVEYIQSTLKSSRSDTPVSPLPSGQKTPKVPVHKMVRTDS
SDPAGRLHAFLQPKPHNLPDTVSSLSAVRSSIRQRRNPKETADLSSVQELLSGVDSCCHP
GLLETVRNCTYVGMADDVFALVQYQTHLYLANVVNLSKELMYQQTLRRFAHFNAIQLSDP
APLSELILLALQEEDLDPENNEKDHLKERIAEMNTELLMEKVEMLEEYFSVFIDSDGNLS
RLPVILDQYTPDMDRVPEFLLCLGNDVEWEDEKACFQGVSAAIGNFYAMHPPLLPNPSGD
GVRFYYTKTSEKSSQENPALGGNVEMESVLDQDLLSDAETAWAQREWSIQHVLFPSMRLF
LKPPASMASNGTFVKVASLEKLYKIFERC
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgacggactgttcgcctcttgcggtggcgatggaagaggaagagtctacagccacggct
atggatgtagaagagtctccgtcgacgtcgattgcaccgagagacccgccgaagatacaa
aggctagaagagtcagtggtgaaccgtatcgcagcgggtgaagtaatccagcgtccagtt
tcggcggttaaggagctcgtcgagaatagcctcgacgccgattcaacttccataagcgtc
actgttaaggacggtggcttgaagctaattcaagtctccgacgatggtcacggcattaga
cgtgaagacttgccgatcctatgcgagaggcatacgacgtcgaagctgagcaagtatgaa
gatttgttctctcttagttcgatgggttttagaggagaggcgcttgctagtatgacttat
gttgctcatgttactgtcaccactatcaccaaaggccagattcatggtcacagagtgtct
tacagagatggtgtgatggagcatgagccaaaggcgtgtgcggctgtcaaaggaacgcag
ataatggtggagaatttgttttataatatgattgctagaaggaagacacttcagaactct
gctgatgattatggaaaaatagttgatttgctgagccggatggccattcatcacaataac
gttagcttctcttgtcgaaagcatggagctgtcaaggctgatgttcactctgtcgtgtcg
tcttcaaggcttgattctatcagatcagtttacggtgtgtcagttgcgaaaagcttgatt
aaagtagaagtctcctctggtgagtcctccggttgtgcttttgatatggaaggttttgtg
tccaattcgaattatgttgctaagaagaccattttggtgctttttattaatgatagattg
gtggaatgttcagctttaaaaagagcaattgagattgtttatgctgcaactttaccaaaa
gcatcgaaaccgtttgtctacatgtcgatcaatttgcctcgtgaacatgttgatatcaat
attcatccaacaaagaaagaggtaagccttttaaaccaggaaatcatgatcgagatgata
cagtcagaggttgaactgaaactgaggaacacaaatgatactaggacgtttcaagagcag
aaagtggaatacattcaatctacgttgaaatcctcgagaagtgatactccagtttctccg
ctgccttctggacaaaaaacaccgaaagttcctgtgcataaaatggtgagaacggattca
tcagatccagctggaaggctacatgcgtttttgcaacctaagccccataatctacctgac
acggtttctagtttgagtgcagtgaggtcttctataagacaaagaagaaacccgaaggaa
actgctgatctttctagtgtccaggaacttctttctggagttgacagctgctgccatcca
ggtttgctggagacagtaaggaattgcacatatgttggaatggcagatgatgttttcgct
ttagttcagtatcaaacacatctatatctagcaaatgtggtgaacctcagcaaagagctc
atgtatcagcaaactcttcgtcgttttgctcattttaatgcaatacagcttagcgatcca
gcccctctgtctgagttgatattgttggctctgcaagaggaggatctagatcctgaaaat
aacgaaaaagatcatctgaaagaaagaatcgctgaaatgaatacagaactccttatggaa
aaggtagagatgttagaggagtatttcagcgtgttcattgattccgatgggaatttgtca
cggcttcctgtcatactcgaccagtatacacctgacatggatcgtgttcctgagttttta
ctatgcttgggaaatgatgttgaatgggaagatgagaaggcttgctttcaaggagtttct
gcagctattgggaatttttacgccatgcatcctcctcttttgccaaatccatctggtgac
ggtgttcggttttattatactaagacaagtgagaagagctctcaggagaatccagcttta
gggggtaacgtcgagatggagtcagttcttgaccaagaccttctctcagatgctgaaacc
gcatgggcgcaacgtgaatggtcaatccaacatgtgctgtttccgtctatgagattgttc
ttaaagccaccagcttccatggcttcaaatgggacttttgttaaggtagcatcccttgaa
aagctgtacaagatcttcgaacggtgctaa
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