Brassica rapa (field mustard): 103858678
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Entry
103858678 CDS
T03449
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103858678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
brp03009
]
103858678
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
103858678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
EIF3I
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_VPS8
Beta-prop_WDR75_2nd
WD40_RFWD3
Beta-prop_IFT140_2nd
Beta-prop_LRRK2
Beta-prop_SCAP
WD40_like
Utp12
VID27
MIOS_WD40
DUF4196
Motif
Other DBs
NCBI-GeneID:
103858678
NCBI-ProteinID:
XP_009134325
LinkDB
All DBs
Position
A03:complement(14192228..14197726)
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AA seq
911 aa
AA seq
DB search
MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISPQLPKKIR
ALASYRDFTFAAFGNEIAVFKRAHQVATWSKHVAKVDLLLLFGEHVLSLDVEGNMFIWAF
KGIEEHLAPVGHVELCEKFTPTCIVHPDTYLNKVLVGSQEGPLQLWNINTKKMLYQFKGW
GSSVCCCVSSPALDVVAIGCADGKIHVHNLKLDQEIVTFEHASRGAVTALSFSTDGRPLL
ASGGSFGVISIWNLNKRRLQSVIRDAHDSSVISLNFLANEPVLMSASADNSLKMWIFDTN
DGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELSQRHISRR
AKKLRLKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAEAYVWRLQNFVLGEHILKPC
PENPTPIKACAISACGNFAVVGTASGWIERFNLQSGISRGSYLDKSVTKSYSHDGEVIGL
ACDSTNTLMISAGYHGDVKVWDFKKRELKSRWDVGCSLVKIVYHRVNGLLATVANDFVIR
LYDVVALRMVREFRGHTDRITDLCFSEDGKWLLSSSMDGSLRIWDVILAKQIDGVHVDVP
ITALSLSPNMDILATAHSDQNGVYLWVNQSMYSGAPNVDSYASGKNVVNVRLPSVSALRS
SEADADDKKTQVSENSESQTAASFLISPEQIPELVTLSLLPKSQWQSLINLDIIKARNKP
IEPPKKPEKAPFFLPSIPSLSGDIVFKSNESDDDGEDEDKNKDSKNSMKNFDALESPFSK
LLKSSWDSKHFSDFTDYIKGLSPSALDIELRMLEIIDEDVEEELIQRPEFISIGQLLDYL
IHEITCRNNFEFMQAVMRLFLKIHGETIRCHPSLQEKARKLLESQSLVWQKMDKLFQSTR
CIVTFLSNSQF
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgggaatcttcgaaccctttagagctataggatacataacgagcacggttcctttctcc
gttcagcgactgggcaccgagaccttcgtcactgtcagcgtcggcaaagctttccagatt
tacaactgtgccaagcttaacctagtcattatcagtcctcaactcccaaagaaaatcaga
gctcttgcttcttaccgtgacttcacttttgctgcctttggtaatgaaattgctgttttc
aaacgtgcccatcaggttgcaacttggagcaagcatgttgctaaagttgatctgcttctc
ttgtttggagaacacgtcctaagtcttgacgttgaggggaacatgttcatatgggcattc
aaaggaattgaagaacatctagctcctgttggacatgttgaactttgtgaaaagttcacc
cctacttgtattgttcatccagacacttacttgaacaaggttcttgttgggagccaagag
ggtccgctgcagctatggaacataaatactaagaagatgctttatcagtttaagggttgg
ggttcatctgtctgctgctgtgtttcgtcccctgccttggatgttgttgccatcggttgt
gctgatggaaagatccatgttcataacttaaaattggaccaagagattgtaacgtttgaa
cacgcctcacgaggtgctgttactgctttgtccttcagcacagatgggcgtccccttctt
gcatctggaggttcttttggtgtgatcagcatctggaatcttaacaaaagaaggcttcag
tcagtcattagagatgcacatgacagctctgtaatctcgttgaactttttagcaaatgaa
cctgtgctaatgagtgcatcagcagataactcactcaagatgtggatttttgacacaaat
gatggtgatcctcgtctactacgcttccggtctgggcatagtgccccacccctgtgtatc
aggttctactctaatggacggcacattttgtccgctggccaggatcgtgccttccgcctg
ttctctgtcatccaggagcaacaaagtagagagctgtctcaaaggcacatatccaggcga
gccaaaaaattgcgtttgaaggaggaagagctgaaattgaagcctgttattgcgtttgat
tgcgctgaaattagggagcgtgattggtgcaacgtggttacatgccatatggatacagca
gaagcttatgtatggaggcttcaaaactttgttcttggagaacatatcctcaaaccatgc
cctgagaatccaacaccaattaaggcttgtgcaatcagtgcatgtggaaactttgcagta
gtcggaacagcaagtggctggattgagagattcaaccttcaatctggaatcagccgtggt
agctacttggataagtcagtgactaaaagttactcccatgatggtgaagtgattggactt
gcttgcgactccacaaacacactcatgataagtgccggataccatggggatgtaaaggtt
tgggatttcaagaagagggaactaaagtccaggtgggatgttgggtgctcattggttaaa
attgtttaccaccgagtaaacggtcttttggctacggtggcaaatgattttgttatccgt
ttgtatgatgttgttgcactgaggatggttcgtgagtttagaggtcatacagaccgtata
acggatctgtgctttagtgaggatggcaagtggctcctctcatctagcatggatggaagt
ctgagaatctgggatgtgatactggcaaaacagattgatggagtgcatgttgatgtgcca
ataacagcattgtctttatcacccaacatggacattttggcaacagctcattctgatcag
aacggtgtctacttgtgggttaaccaatccatgtactctggagctccaaatgttgactcc
tatgctagtgggaaaaatgtggtgaatgttagattgccttcagtctctgcgttgagatct
tctgaagctgatgctgatgataagaagacgcaagtttcagaaaattctgaaagccaaact
gctgccagcttcttgatttcccctgagcagatcccagagcttgttactctgtctctttta
ccaaaaagccagtggcaaagcttgatcaacttggatataatcaaggcccggaacaaacca
atagagcctccaaagaaacctgagaaggctccttttttcctgccgtctattccctctctt
tctggagatatagtgttcaagtcaaatgaatcagacgatgatggggaagatgaggacaag
aataaagactccaagaatagcatgaagaattttgatgcattggaatctccattctcaaaa
cttctcaagtcctcatgggattcaaaacacttttcagatttcacagattacattaagggt
ttatccccatcagctctggacattgagctaaggatgcttgaaattatagatgaagatgtt
gaagaagagcttatccaaagacctgagtttatatccattggacagcttcttgattacctc
atccatgagatcacttgcagaaacaactttgagtttatgcaggcggttatgagattgttt
ctgaagatccatggcgagaccataaggtgccacccaagtttacaagagaaggcgaggaag
ctgttagaaagtcagagtttggtgtggcagaagatggacaagcttttccagagcacaaga
tgcatagttaccttccttagcaattcacagttttga
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