Brassica rapa (field mustard): 103858702
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Entry
103858702 CDS
T03449
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103858702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103858702
04121 Ubiquitin system [BR:
brp04121
]
103858702
03036 Chromosome and associated proteins [BR:
brp03036
]
103858702
03400 DNA repair and recombination proteins [BR:
brp03400
]
103858702
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
103858702
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
103858702
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
103858702
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
103858702
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-HC5HC2H_2
zf-C3HC4
RTT107_BRCT_5
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-RING_6
zf-RING_10
PHD_NSD
zf-Nse
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
103858702
NCBI-ProteinID:
XP_009134355
LinkDB
All DBs
Position
A01:6172512..6177238
Genome browser
AA seq
928 aa
AA seq
DB search
MGDASHLEKMGRELKCPICLSLFDSAASLSCNHVFCNECIVKSMKVDATCPVCKIPFHRR
EIRGAPHMDSLVSIYKNMEDASGVHMFVSQNIPSPSEKEKHVGDASIERKNGKRHQGASK
GRVSKIRGCKKAKERDLDAPGPIVMKPSSQTKKRVQLLQNQSTTESLTKSTESFESAEKL
KDYTEETVIRLNEHTSLNKVENMAPFFWLRDEDDEESLSQPAESDPFLDVTPVDVPSFSD
LKDSDHDSPSKAIEQERPNPGEMFDSEMFEWTQRPSSPEILPSPVKAKALRKDETQMNLP
KGASSNKKRKAGTARKTVAKRLVGVSKEDYTEPSAGATISEKQESGGNSGTSTRKDENVK
AKRATRNKGQISLVEEAGVNTHVEAEVKQGTKRKRSSVKVSPNPPVAGSNELSLGTEDVG
KGYQELTHGSAGTQPEKQSPSEKYSLRKRIKSSAPSLPKCSPVITKKKTSEKRSKLGSSS
IPSRVTQIIRDELNQLGDRQDSSNKKKPSVDEGTHTMQVSEKSSTMNKPSLGDNALLRRC
DGPLTSKFTCAFCQSSEDTEASGEMAHYHRGEPVSADFSGGSKVIHAHKNCAEWAPNVYF
NNLTAVNLDAELTRSRRITCSSCGLKGAALGCYNASCKSSFHVTCAKQIPECRWDNKNFV
MLCPSDASSKLPCEETSPKGRKRKCSPPKGLQHSRPNQVSVIPDISENQSKPFHGLSKKL
VLCCSGLTDEEKSVISEFAELSGVTILRKWEPRVTHIIASINDNGACKRTLKFMMGVLEG
KWILSIDWIKACMNNREYVTEEPYEISIDVHGTRQGPYIGRQRALNKEPKLFSGLKFYMM
GDFEVAYKGYLQDMIVAAGGTILLRRPIADDDSEASTIIVFSVEPSKKKTLTQRRSDAEA
LAKSSRARAASSSWVLDSIAGCQILDLI
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgcaagtcacttggagaagatgggaagagaactcaagtgtcctatctgcttg
agtctatttgactctgcagcttcactttcgtgcaaccatgtgttctgcaatgaatgcata
gtgaagtccatgaaagtggatgctacttgtccagtttgtaaaatcccattccatcgtaga
gagattcgaggtgctcctcacatggatagcttggtgagtatttacaaaaacatggaagat
gcttctggtgtccacatgtttgttagccagaacataccatcaccatcagaaaaagaaaag
catgttggagatgcttccattgaaaggaaaaatggcaagagacatcagggagctagtaag
ggtcgagtatccaagattagagggtgtaaaaaagccaaggaaagagatcttgatgctcct
ggacctattgttatgaaaccttcatcccaaaccaagaaaagggttcagttgttgcagaat
caatctactactgaaagcttaacaaaatctactgaatctttcgagtcagctgaaaaactc
aaggattacactgaagaaactgtgattcgcttgaatgagcatacgagtctgaataaagta
gaaaatatggcacccttcttttggttgagagatgaagatgatgaggagagcttaagtcag
ccagcagagagtgatccatttctagacgttacacctgttgatgttccttctttcagcgac
ttgaaggactcagatcatgacagcccgtcgaaagcaattgagcaagaaaggcccaatcca
ggagaaatgtttgacagtgaaatgtttgagtggactcaaaggccttcttctccagagatt
ctacctagtcctgtgaaggccaaggccctacgtaaagatgagacacaaatgaatctacct
aaaggagcatcgtccaataaaaaacgcaaagcaggaactgcaagaaagacagttgctaaa
cgactcgttggggtttccaaggaggactacacggaaccgtctgcaggagcaactattagt
gagaaacaagagtctggtggaaattctggcacatctaccaggaaggatgaaaatgtgaaa
gctaaacgggctacaagaaacaagggccagatttcactagttgaggaggctggcgtaaat
acacatgtggaagcagaggtaaagcaggggacaaagaggaaacgatctagcgttaaagtc
tctccgaatcccccagttgctggatctaatgagctctcacttggaacagaagatgttgga
aaggggtatcaggaactaacccatggttcagctggcacacaacctgaaaaacaaagtccc
tccgagaagtactctctgagaaagagaataaaatccagtgcaccttccttaccaaaatgt
tctcctgtgatcactaaaaagaagacttcagaaaagagatcaaaacttggttcctcttca
ataccaagcagagttacacaaatcattagggatgagttgaatcaattgggagatagacaa
gattcatctaacaaaaagaaaccgtctgtggatgaaggcactcacaccatgcaagtttca
gagaaaagctcaacgatgaacaagccctcacttggagataatgcgcttttgcgacgatgt
gatggacctctaacaagtaaattcacatgcgccttttgtcagtcttccgaagacacagag
gcatcaggagaaatggctcactaccacagaggtgaacctgtctctgcagattttagtggt
gggtctaaggtcatacatgctcacaaaaactgtgctgaatgggctccgaatgtatacttc
aacaaccttaccgcagtcaaccttgatgcggagctgacgagaagccggaggataacttgc
agtagctgtggacttaaaggcgcagcacttggctgttacaatgcgagttgcaagagtagc
tttcatgttacgtgtgcaaaacagataccagaatgcagatgggacaataaaaactttgta
atgctatgcccttcggatgcatcctctaagttgccctgtgaagagactagtccaaaggga
agaaaacgcaagtgtagtcctcctaaagggctacaacactctcggcctaatcaagtatct
gtaatacctgacatcagtgagaaccagagcaagccttttcacggattatccaagaaactt
gttctatgctgttcaggacttacagatgaagagaagagtgtaatttcagagttcgctgaa
ctgtctggagttaccatcttgagaaaatgggagccaagagttacgcatatcattgcatca
atcaatgataatggagcctgcaaaaggaccctcaaattcatgatgggggtcttggagggg
aaatggattctaagcattgattggatcaaggcctgtatgaataacagagaatatgtgacc
gaggagccatatgagatttccatagatgttcatggaacacgacaaggaccttatattgga
agacaaagagctttgaacaaggaaccaaaactatttagtggactgaagttttacatgatg
ggagatttcgaggttgcttacaaagggtatcttcaagatatgattgtagcagcaggagga
acaatcctgctcaggcgacccattgctgatgatgatagtgaagcttcaacgatcatagtg
tttagtgttgagccaagcaagaagaaaactctgacacaaagaagatctgatgctgaagcc
ttggctaagtcttctagagcaagagctgcaagcagttcatgggtcttggattctattgca
ggttgccaaattctagacttgatataa
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