Brassica rapa (field mustard): 103858799
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Entry
103858799 CDS
T03449
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
brp03016
]
103858799
Enzymes [BR:
brp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
103858799
Transfer RNA biogenesis [BR:
brp03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
103858799
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Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
Methyltransf_32
zf-U11-48K
Methyltransf_25
Maf_flag10_N
Methyltransf_12
Methyltransf_11
MTS
Motif
Other DBs
NCBI-GeneID:
103858799
NCBI-ProteinID:
XP_009134469
UniProt:
M4C9N3
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Position
A03:14812935..14815174
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AA seq
449 aa
AA seq
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MAARSGSRCNFWLPKKKRSCANTRIESSLFCGNHSQRSDGQWLPCPIDPSHSVLQENLES
HVKRCPLLKQNVALSGQVFYQKGINAGNQEEEEENIGSCYSVVTSEMKRSLVYGMSVSTF
HQLVKKIEEVHGGICNDIEDSHLSPEACNIWFNKEIDRKLPFQEKHVLQQGSILGNLEKI
GALKRCNTNVECSEKDEDSVPAVVEFGAGRGYLTQMLADCYGVKKVYLVERKSYKLKADR
SLRQKENLVLERMRIDIEDLNLNAVESLQGVPYVAVGKHLCGPATDLSLRCCLSRQDGES
PVLRGLAIATCCHHLCQWKSYINKEYIIGMGISKDEFHALTWFTSWAVDDDHGSKVPGVE
GSDLIASKEEEEGDKVEDDSLSSVEEVVKKMKPMERAVLGFKCKQVIDAGRMKWVKKHGL
DSKLVKYIPASISPENTLLVAGKLSPVLA
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgagaagtggcagtcgatgcaatttctggcttccgaagaagaaaagatcatgc
gccaatactcgaatcgagagctccctgttttgtggaaaccatagccagagatcggatggt
cagtggcttccatgccctattgatccttctcactctgtgttgcaggagaatctcgaaagt
catgtaaagagatgtcctttgttgaaacagaacgttgcattgtctggtcaagtgttttat
caaaagggtattaatgccggaaaccaagaagaagaagaagaaaatataggttcttgttac
tctgttgttacatcagagatgaagaggagtctggtctatggtatgagtgtttccacgttt
catcagcttgttaagaagattgaggaggttcatgggggtatatgtaatgatatagaagat
tcgcatttgtcacctgaagcttgtaacatatggtttaacaaggagatagataggaagtta
ccgtttcaagagaaacatgttttgcaacaaggttctattctgggtaatttggaaaagatt
ggtgcattgaagaggtgtaacacaaatgttgaatgttccgagaaagatgaagatagtgtg
cctgcggttgttgaatttggagctgggagaggatacttaacgcagatgctagctgattgc
tacggcgtcaagaaagtgtatttagttgagaggaagtcttataagcttaaggctgatagg
tcactgaggcaaaaggagaacttggtattagagcgtatgagaatcgacattgaagatttg
aaccttaacgcggtcgaatcattacaaggtgttccttatgtggctgttgggaaacatcta
tgtggtcctgcaacagatttgagcttaagatgttgtctatctagacaagatggtgaaagc
ccagttctaagaggtcttgctatcgccacttgttgccatcatctttgccaatggaaaagc
tatataaataaagaatatatcattggcatggggatttctaaagacgagttccatgccttg
acttggttcactagctgggctgtagatgatgatcatggttccaaagttcccggtgttgaa
ggcagtgaccttattgcttcaaaggaggaggaagaaggagacaaggtggaagatgattct
ttgagcagcgttgaggaagttgtgaagaaaatgaagcccatggaaagagctgttttaggt
tttaaatgcaagcaggtaatcgatgcagggaggatgaagtgggttaagaagcatgggtta
gattcaaagcttgtgaaatatattccggcaagcatctcaccggagaacactttactggtc
gccggaaagctaagtccggttcttgcttga
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