Brassica rapa (field mustard): 103858860
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Entry
103858860 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103858860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103858860
03036 Chromosome and associated proteins [BR:
brp03036
]
103858860
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103858860
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103858860
mRNA degradation factors
5'-3' decay
Decapping complex
103858860
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103858860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
TFIIA
DUF6610
Motif
Other DBs
NCBI-GeneID:
103858860
NCBI-ProteinID:
XP_009134538
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All DBs
Position
A03:complement(15105451..15109300)
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AA seq
514 aa
AA seq
DB search
MMNNNNNNNRGGGGRYPPGIGAGRGAINPNPNFQSRPGYQQPQQPQYVQRGAYSHQQQQF
QQATSQPPRQYHQQQHQQQWLPRPQISSGNSNGGGEGDAVVEVEKTVLSDTNSEDWKARL
KLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDI
LARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVM
VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLAMDEADKLLSQEFQ
PSVEHLISFLPQNRQILMFSATFPVTVKYFKDRFLTNPYIINLMDELTLKGITQFYAFVE
ERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVF
HDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNL
ITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCQ
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacaacaacaacaacaataaccgtggaggaggaggaaggtaccctccagggatt
ggcgctggccgtggtgccattaaccctaaccctaacttccagtcccggcctggctatcag
cagccgcagcagccgcagtacgttcagcgaggcgcttactcccaccaacaacagcagttt
cagcaagccacgtctcagcctcctcgtcaataccaccagcagcaacatcagcagcaatgg
cttcctagaccccagatctctagcggtaacagtaacggaggaggagaaggagacgcagtc
gttgaagttgaaaaaactgttctctccgacacaaattcggaagactggaaagcgaggcta
aaactacctgcacctgatactcgctacagaactgaggatgtgacagccactaagggaaac
gagtttgaagactattttctgaaacgagagcttttaatgggaatctatgagaagggtttt
gaaagaccttctcctattcaggaagagagtattcctatcgccttgactggtagagatatc
cttgcccgagccaagaacggcactggcaagactgccgccttttgtattcctgtcttggaa
aaaattgaccaagataacaatgtcattcaagctgtgataattgttccaactcgagagtta
gcccttcagacatcacaggtgtgtaaggagttggggaagcatttgaagattcaagtcatg
gtgaccactggaggcaccagtctgaaagatgatatcatgcgtttgtatcagcctgtccat
ttactcgtaggaactcctggaagaattttggatctcaccaagaaaggtgtttgcgttttg
aaagattgttctgtgctcgctatggatgaggctgataagcttttgtctcaagagttccaa
ccttcagtggaacatttgatcagctttcttccccaaaatcgccagattttgatgttctca
gccacgtttcctgtcactgtcaagtattttaaggatcggtttttgacgaatccttacatc
attaatctcatggatgaacttacgctcaagggtattacccaattctatgcttttgttgaa
gaacgacagaagattcattgcttgaatacactattctccaagctgcaaattaaccaatcg
atcatattctgcaactccgtgaaccgtgtggagctcttagctaagaagattacagaactt
gggtattcttgcttttacattcatgcaaagatgcttcaagaccaccgaaacagagtgttc
catgactttcgcaatggtgcatgccggaatcttgtgtgtactgacctgttcacacgtggg
attgacattcaagcagtcaatgtggtgataaactttgatttcccaaagaatgcagaaacg
tatcttcacagggttggtcgatcaggaaggtttggccatcttggtttagctgtgaatctt
atcacctatgaggaccgctttaacctctaccggattgagcaagagcttggaacggagatc
aagcaaattcctccacatatcgatcaggcaatttattgccaataa
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