Brassica rapa (field mustard): 103858923
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Entry
103858923 CDS
T03449
Name
(RefSeq) probable pectate lyase 7
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103858923
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103858923
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103858923
NCBI-ProteinID:
XP_009134622
UniProt:
A0A3P6AA20
M4C9Y2
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Position
A03:15335665..15337989
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AA seq
471 aa
AA seq
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METARLFKLVCVICIASLIPTLRANVAETDDYWVKMANEARKRTLMAYHPDPYQIVDHFH
ERHYDNSTDVEETEEHASEEEDDIEMSSSLTNSTRRSLRGRGKGKGRGKWSKLKGPCTAS
NPIDKCWRCQPDWARRRKKLVKCVRGFGYRTTGGKRGRIYVVTSNRDDDTVNPRPGTLRH
AVIQNEPLWIIFKHDMSIRLSQELMINSHKTIDARGTNVHIAYGAGITMQYVRNIIIHGL
HVHHIVPGSGGMIRNSNDHFGFRGQADGDGISIFGATNIWLDHISMSKCQDGLIDAIMGS
TGITISNSHFTHHNDVMLLGAQNDNHADKKMQVTVAFNHFGKGLVQRMPRIRWGFVHVVN
NDYTHWELYAIGGSQSPTILSHGNRFIAPPHIQHYREVTKRDYAPESEWKNWNWRSDKDI
FMNNAYFRQSGNPKFMCSHSRQQMIKPKHGSAVSKLTKYAGALDCRVGKPC
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggagacggctaggcttttcaaattagtgtgtgtgatttgtattgccagtttgattccg
accttacgagccaatgttgcggagaccgatgattattgggtaaaaatggccaatgaagct
cggaaacgtacccttatggcttatcatcctgatccttatcagattgtcgaccacttccac
gagcgtcactacgacaactctactgatgttgaggagacggaggaacacgcatccgaggaa
gaggacgacattgagatgagttctagtctgacgaacagcacaagacggagcctaagaggt
agaggtaaaggtaaaggtagagggaaatggagcaagctaaagggaccttgcactgcaagt
aaccctattgataaatgttggcgttgccagcccgattgggccaggcgtcgcaagaagctc
gtcaaatgtgttcgtggcttcggttacaggaccacaggaggcaaacgcggtcgaatctac
gtggtcacaagcaacagagacgatgatacggtgaatcctagacccggaacacttcgtcac
gctgtgattcagaacgaacctctctggatcattttcaagcacgatatgagtattaggttg
agccaagagctaatgattaatagtcacaagacgatcgatgctcgtggcactaacgtgcac
atcgcatatggtgctgggatcacgatgcagtacgtgcgaaacattatcatccatgggctt
cacgtccatcacatcgtcccgggcagtggtggcatgataagaaactctaatgaccacttt
gggtttagaggacaggccgatggagatggtatctctatctttggagcaacaaacatttgg
cttgaccacatttctatgtctaaatgccaagatggtctcatcgacgctataatgggctcc
accggtatcactatctctaactctcatttcacccaccacaacgatgtgatgttgcttggt
gcacaaaatgacaaccacgcggacaagaagatgcaagtcactgtggctttcaaccacttt
ggtaaaggacttgtgcagaggatgccgaggattcggtggggtttcgtccatgttgtcaac
aatgactatactcactgggagctttatgctatcggcggtagccaaagtcctaccattctc
agccacggaaaccgtttcatcgctcctcctcacatacaacattacagagaggtaacaaag
agggattatgctccagaatcggagtggaaaaactggaattggagatccgacaaagacatt
ttcatgaacaacgcatatttcagacaatctggaaatccaaaattcatgtgttcacactct
agacaacagatgataaagcccaaacacggttcggccgtttcaaagcttaccaaatacgcc
ggagcattggattgccgggtcggaaaaccatgctaa
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