Brassica rapa (field mustard): 103859203
Help
Entry
103859203 CDS
T03449
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103859203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103859203
03009 Ribosome biogenesis [BR:
brp03009
]
103859203
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103859203
Spliceosome [BR:
brp03041
]
Complex A
U2 snRNP components
U2 related factors
103859203
Complex B
103859203
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
103859203
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
90S particles
Helicases
103859203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
T2SSE
AAA_16
SRP54
AAA_29
PhoH
ATPase
AAA_7
FtsK_SpoIIIE
AAA_30
nSTAND1
ABC_tran
TsaE
Myosin_head
AAA_11
TrwB_AAD_bind
AAA_24
NTPase_1
Motif
Other DBs
NCBI-GeneID:
103859203
NCBI-ProteinID:
XP_033142944
LinkDB
All DBs
Position
A03:complement(16416236..16423758)
Genome browser
AA seq
432 aa
AA seq
DB search
MMMKKKSERRNLPVWGQKEEFVRTLKENQMVMVTGETGSGKTTQIPQFVLEAMMDEIPRS
DDQWLIGCTQPHRVAAMTAARRVAEEMDVKLGEEVGYTVRFEDLSSPRTVLKYLTDVMLL
REAMVDPLFLRYKVIIVDEVHDRSLATDLLISILNRTLISRPDLKLVVMSATLQVFNKRY
FTGAPLIKVPSGRLLHPVEILYTQEPVMDYLESAISKVIQIHTCEPPGDVLVFLTGEEEI
EQACSRIVRSLGDQVTVVPLYSSLPPALQHKIFDPTPPPHSVRKIIVSTNVAETSLSMDG
IVYVVDPGFSKQKNYSYLTTDELWFVSRISQASAYQRAGRAGRKCFRLYTEKTFNDFMDK
EIPEILRSNLVKTVLTLKRLGVEDLTYFEYIDPPSTRMLFRGMEDLFHLGAMDDQGNLTN
IGHMMESLEEPL
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgaagaagaagtcagaacgtaggaatctaccagtatgggggcaaaaagaagag
tttgtccgaacattgaaggagaatcagatggtgatggtgacgggtgagaccggaagtggt
aaaacaacgcagatcccacagtttgttttagaagcaatgatggatgaaatccctcgctct
gatgatcagtggttgattgggtgcacgcagcctcatcgagttgcagccatgactgcggca
cgtcgtgtcgctgaagagatggatgtaaagctcggggaagaagtcggttacacagtccgt
ttcgaggatctcagtagcccccgaacggtgctcaagtacctgactgatgtaatgcttctg
agggaagctatggtggatccactctttttgagatacaaagtgattatcgttgacgaagtt
catgatagaagtttagccacagatttacttattagtattcttaaccgcaccttgattagc
cgacctgatcttaagcttgttgttatgagtgcaaccctacaggtttttaacaaaaggtat
tttacaggtgcgcctctcatcaaagtcccttctggtaggctcctccatccagtggagatc
ttgtacactcaagaacctgtgatggactatctcgagtctgccataagcaaagttatccag
attcacacgtgtgagccacctggtgacgttcttgttttcttgaccggggaagaagagatt
gaacaagcttgcagcagaattgtccgtagtcttggagatcaagtcacagttgtgcccttg
tattcctctcttccaccagctttgcaacacaagatcttcgatcctacaccaccaccacat
tcagtgagaaagatcatcgtctccaccaacgttgctgagacttctttgtccatggacggg
attgtttatgtggttgatcctggtttctccaagcaaaagaactatagttatctcactact
gacgagctctggtttgtgtcccgaatatcacaagcaagtgcttaccagagagcaggacgt
gccggtagaaaatgttttaggctctacactgagaagactttcaatgacttcatggataag
gagattcctgagatacttagatcaaaccttgttaaaacagttttgactttaaaaaggcta
ggggtggaggacttgacatattttgaatatatagatcctccttccactcgaatgctcttt
cggggcatggaggatttgtttcatctaggagcaatggatgaccaaggtaacttgacaaat
ataggccacatgatggagagtttggaagagccactttga
DBGET
integrated database retrieval system
