Brassica rapa (field mustard): 103859243
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Entry
103859243 CDS
T03449
Name
(RefSeq) polygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Module
brp_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103859243
Enzymes [BR:
brp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
103859243
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Motif
Pfam:
Glyco_hydro_28
NuBaID_C
DUF4135
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
103859243
NCBI-ProteinID:
XP_009134996
UniProt:
A0A398A6J8
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Position
A03:complement(16539881..16541483)
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AA seq
395 aa
AA seq
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MGAYFGAFTVFIFCLLGFSANAVYITIGSSPGSDITQALLKAFTTACQSPTPSRVVIPKG
EFKLGEIQMRGPCKAPVEITIQGTVKADGNAIQGKDTWIVFGNINGFKLNGGGAFDGEGN
AAWRVNNCHQTFNCKKLPISIRFDFVENAEIRDISSIDAKNFHINVLGAKNMTMDHINII
APKDSPNTDGIHLGRSDGVKILNTFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSL
GRYGNEQDVSGIRVINCTLQQTDNGLRIKTWPSAACSTTASDIHFENIILKNVMNPILID
QEYCPWNQCNKQKPSTIKLANISFKQIRGTSGNKDAVKLLCSRGYPCQNVEIGDIDIRYS
GADGPATFQCSNVSPKLMGTQSPKACSGPVTNLPQ
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcatattttggagcttttaccgtttttattttctgtttattgggattttcagcc
aatgctgtatacatcaccattggctcctctccaggttctgacattactcaggcacttctg
aaagcatttacaacagcatgccaatctccaacaccgagcagagtggtgatcccaaaagga
gagttcaagcttggtgagatccagatgaggggtccatgcaaagctccagtcgagatcacc
attcaaggcactgtcaaagctgatggtaacgcgatccagggaaaggacacatggattgtc
tttggcaacattaatggctttaagttgaacggaggtggagctttcgatggtgaaggaaac
gcagcttggagagttaacaactgtcaccagactttcaactgcaagaaacttcccatcagt
ataaggtttgatttcgtggagaacgctgagatcagagacatatcttcaatagatgccaag
aacttccacatcaacgtgctcggtgccaagaacatgaccatggatcacatcaacatcatt
gccccaaaagacagtcccaacactgacggtatccatttgggaagaagtgacggagtcaag
atccttaacacattcatctccaccggagacgactgtatatccgttggagatgggatgaag
aaccttcacgtggagaaagtcacgtgcggtccaggacatggaatcagtgtcggaagcctt
ggaaggtacggaaacgaacaggatgtcagcggcattagagtcataaactgcactctccaa
cagactgacaacggactgaggatcaagacatggccttctgcagcttgctccaccaccgcc
tccgatattcatttcgagaatatcattctcaagaacgttatgaacccaatcctcatcgac
caagagtactgcccttggaaccaatgtaacaagcagaaaccatcaacgattaagcttgcc
aacatcagcttcaagcagatcagaggaacatcagggaacaaggatgcagtgaagctattg
tgcagcaggggatacccatgccaaaacgttgagattggagacattgacattaggtacagc
ggagcagatggtccagcgactttccagtgctcaaacgtgagccccaaactcatgggaact
cagagccctaaagcttgcagtggtccagtgaccaacttaccccaataa
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