Brassica rapa (field mustard): 103859322
Help
Entry
103859322 CDS
T03449
Name
(RefSeq) DNA-directed RNA polymerase II subunit 2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03020
RNA polymerase
brp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103859322
09124 Replication and repair
03420 Nucleotide excision repair
103859322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103859322
03400 DNA repair and recombination proteins [BR:
brp03400
]
103859322
Enzymes [BR:
brp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103859322
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
103859322
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
103859322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
103859322
NCBI-ProteinID:
XP_009135083
UniProt:
A0A8D9LUE9
M4DAP0
LinkDB
All DBs
Position
A01:complement(6463838..6470264)
Genome browser
AA seq
1189 aa
AA seq
DB search
MDYNNEYEQEPTYIEEDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
DESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN
LTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTE
LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPP
STMFVRMLARASAKGGSSGQYIRCTLPYIKAEIPIIIVFRALGFVADKDILEHICYDFAD
NQMMELLRPSLEEAFVIQNQQVALDYIGKRGAPMGVTKEKRIKYAKDILQKEMLPHVGVG
EFCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD
VRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY
ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG
SAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVD
VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQRLLIKKRDIYALQQRESAEEDGWHH
LVAKGFIEYIDTEEEETTMISMTISDLVQARLRPDEAYSETYTHCEIHPSLILGVCASII
PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR
PDRATTMGMRHGSYEKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHS
ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED
MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA
LHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
AEGRSRDGGLRFGEMERDCMIAHGAANFLKERLFDQSDAYRVHVCETCGLIAIANLKKNS
FECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKGLKNAKGRK
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggattataataacgaatacgaacaagaaccgacttacatcgaagaagatgacgacgag
gagatcacccaggaggacgcctgggcggttatctctgcctatttcgaagagaaaggtctc
gttcgccagcagctcgattccttcgatgagtttatccagaacactatgcaagaaatcgtc
gacgagtccgctgatatcgagatccgacctgaatctcagcacaatcctggccaccaatct
gatttcgccgagacaatctacaagattagttttggacagatttatctgagtaaacccatg
atgacggaatctgatggagagactgccaccttgtttcccaaagctgcaaggttgaggaac
ctcacgtactcagctcctttgtatgtcgatgtttctaagagagttattaagaaagggcat
gatggtgaggaagttacggagacacaggattttaccaaagttttcatcggaaaggttccc
atcatgctccggtctagttattgtaccttgtttcagaactcggagaaagatctgacagag
cttggagaatgtccttatgatcagggcggatacttcattatcaatggcagtgaaaaggtt
ctgattgctcaggagaagatgagcacgaaccatgtttatgtttttaagaagagacagcca
aataagtatgcatatgttggcgaagtccgttccatggctgagaaccaaaataggcctcca
agcacaatgttcgttcgcatgcttgctcgtgctagtgcaaaagggggttcatctggacag
tatattcggtgtactctcccttacatcaaagcagaaattcctattatcattgtatttcgt
gcattgggatttgttgccgataaggacattttggaacacatttgctatgactttgccgat
aaccagatgatggagttgctcaggccttctttagaagaagcatttgttattcaaaatcag
caggttgctctcgactatattgggaaacgtggtgcacctatgggtgtaaccaaggaaaag
aggataaagtatgcaaaagatatccttcagaaagaaatgcttcctcatgtaggagttggg
gagttttgtgagacgaagaaagcttactatttcgggtatatcatacaccggctgctgctt
tgtgcacttggccgaaggccagaagatgatcgggatcattatgggaacaaaaggctggat
cttgctggtcctttacttggagggctatttagaatgcttttcagaaagctgacgagggat
gtgagatcttatgtacagaagtgcgttgacaatggcaaagaagtcaatcttcaatttgcc
attaaggctaaaacaatcacctctggcctgaaatattctcttgctactgggaactggggc
caggcaaacgctgctggcacaagggctggagtctctcaggttctaaatcggttaacatat
gcttccactttgtcacatctgaggcgtctcaattctcctattgggcgtgaaggaaaattg
gcaaaaccaagacaactgcacaactcacagtggggtatgatgtgccctgctgaaacacct
gaaggacaggcttgtgggctagtgaaaaacttggcgctcatggtctatattacagttggg
tcagctgcttatccgatcttggaatttctggaagaatggggaactgagaattttgaggaa
atctctccatcagttataccccaagccacaaaaatctttgttaatggaatgtgggttgga
gttcatcgagatcctgacatgttggtgaaaacgttgagacgtttgagaagaagggttgat
gttaacactgaagttggcgttgttagagatattcgtctgaaagagctccggatatacact
gactatggtcgttgtagtcgtcccttgtttattgtggataaccagaggctattaataaag
aagagagatatctatgctctgcaacaaagggaaagtgcagaagaagatggttggcatcat
ctagttgcaaaagggtttatagaatacatagacacagaggaagaggagacgactatgata
tccatgactatcagtgatctggttcaagccagactccgtcccgacgaggcatattctgaa
acttacacacactgtgagattcacccttcgttgatattgggcgtatgtgcttcgattata
ccttttcccgaccataaccagtcaccccgtaatacatatcaatctgctatgggaaagcaa
gctatgggaatatatgtcaccaactaccaatttcgcatggatacattagcctatgttctc
tattaccctcaaaagcctctggttaccacacgagctatggagcatcttcattttaggcaa
cttccagcagggattaatgctattgttgccatttcttgctactctggatataatcaagaa
gattctgtcatcatgaatcagtcttcaatagaccgtggtttctttagatccttgttcttt
cggtcatacagggacgaggagaaaaaaatggggacccttgtcaaagaagactttggacgc
ccagacagggcaactacgatgggtatgcgacatggttcttatgagaaactggatgatgat
ggtcttgcacctcctggtactagagtttcaggggaggatgtaatcattgggaaaaccact
cccatatctcaagatgaggctcaaggacaatcatcacgatacaccagacgtgatcatagt
ataagcttgcgacatagtgaaactggaatggtcgatcaggtgttgttgaccacaaatgct
gatggtttgaggtttgtgaaagtgagggttagatctgttcgtatccctcaaattggagac
aaattcagcagtagacacggtcagaagggaactgttggcatgacctacacacaggaggac
atgccttggacaattgaaggcgttacccctgacattatagtgaatccacatgctattccc
tctcggatgacaattggacagctgattgagtgcatcatgggaaaagtggcagctcatatg
ggaaaagaaggagacgcgactccttttacagatgtcacggtggataatataagcaaagct
ctccataaatgtggctaccaaatgcgtggatttgagcgaatgtacaacggtcacacgggc
agaccactcacagctatgatattcctcggaccaacttattaccaaaggttgaagcatatg
gttgatgacaagattcactcgcgtggacgaggtcctgtgcagatcttaacaagacagccg
gctgaaggacgatcccgtgacggtggtctgcgttttggagaaatggaacgcgattgcatg
attgcacacggtgctgcaaacttcctgaaagagaggctgtttgatcagagcgatgcgtat
agggtacacgtgtgtgaaacctgtgggctcatcgccattgcaaacctgaaaaagaattct
ttcgaatgcagaggttgcaagaacaaaacagatattgttcaggttcacattccatatgct
tgcaaattgctcttccaagagcttatgtcaatggcgattgcaccacggatgcttactaaa
ggcttgaaaaatgctaaaggcagaaagtga
DBGET
integrated database retrieval system
