Brassica rapa (field mustard): 103859423
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Entry
103859423 CDS
T03449
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103859423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103859423
03041 Spliceosome [BR:
brp03041
]
103859423
03036 Chromosome and associated proteins [BR:
brp03036
]
103859423
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
103859423
Spliceosome [BR:
brp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103859423
Complex B
103859423
Complex C
U2 SnRNP specific factors
103859423
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
103859423
TFTC complex
103859423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
103859423
NCBI-ProteinID:
XP_009135201
LinkDB
All DBs
Position
A03:17328188..17334783
Genome browser
AA seq
1333 aa
AA seq
DB search
MMAAPEDESSAHSQSSSAATATPTPPPSSVGDHYLAKCVLPPSVVLQVAYGYFRSPSSRD
VVFGKETCLELVVIGEDGFVESVCEQNVFGTIKDLAVIPRSKMGKDLLAVLSDSGKLSFL
SFSNEMHRFLPIQHVQLSSPGNSRTQLGRMLTVDSSGLFLAVSAYHDRFALFSLSSSSMA
DIIHERIFYPSEDGGKTSSVQELSGTIWSMCFISKGFNESKGYDPVLAIVLNRKGSLLNE
LVLFRWNIKEESICLISEYVEAGALAHSIVEVPHSSGFAFLFRIGDALLMDLRDPQNPCC
LVRTSLDLVPPASLVEEHFVEESCRVQDGDDEGLSNVAASALLKLSDWDPMFIDTESDIG
KLSSKHVSSWTWEPDHNYNPRMIICLDDGEFFVFELIYEDDGVKINISECLYKGLPCKEI
LWVEGGFLATFSEMADGTVFKLGKEKLHWMSSIQNIAPILDFSVVDDQNEKRDQMFACCG
VTPEGSLRIIRSGVNVEKLLKTAPVYQGITGTWTVKMKLPDVYHSFLVLSFVEETRVLSV
GLSFKDVTDSVGFQPDVCTLACGLVADGLLVQIHQDAVRLCMANMDGSSPFVSSWFPENV
SISLGAVAEDLIVVSTSNPCFLSVLGVRSVSSHCCEIYEIQRVELQYEVSCISIPQKSIG
KKRCKAAILSGMERGYTFLIGTHKPSVEVLSFSEDDGGGLRVLASGMVSLTNTMGTAIRG
CIPQDVRLVLVDQVYVLSGLRNGMLLRFEWPPFSHSSGLNKEEMDIVVGERENLPIDLVL
IATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLHTARQSLSYTSISFQASTHATPVCSS
ECPQGILFVAENSLHLVEMVHSKRLNAQKFHLGGTPRKVIYHSESKLLIVMRTDLCDAGT
SDICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEQVLVVGTSLSSGPAILPSGEAEST
KGRILILCLVHTQNSDSGSMTICSKDGLSSQRTSPFRDEQLSSSSLCSSPDDNSYDDDIK
LDEAETWHLKLASATTWPGMVLAICPYLDRFFLASAGNAFYVCGFPNDSPDKMKRFAVGR
TRFMITSLRTYLTRIVVGDCRDGVLFYSYHEDVKKLHQVYCDPAQRLVADCFLMDVNSVA
VSDRKGSIAILSCKDHSDFEYSNPESNLNLNCAYHMGEVAMAIKKGGSIYKLPAGDVLRS
YGLSKSTDAADDTIIAGTLLGSIFVFAPISREEYELLEAVQAKLVVHPLTAPVLGNDHKE
FRGRENPSQATKILDGDMLAQFLELTNRQQESVLSTPQPSPSSLKASSKQCPSPPLMLHQ
VVQLLERVHYALH
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagctccggaggatgaatcttccgctcactctcaatcatcttctgctgccact
gcgactcccactcctcctccttcctccgtaggtgatcattacctcgctaagtgcgtcctc
ccccccagcgtcgtcctccaggttgcttatggctacttccgctctccttcctcccgcgac
gtcgttttcggaaaggagacctgcctagagctggtggttataggtgaagatgggtttgtt
gaatctgtctgtgaacagaatgtattcggaactattaaggatttggctgttatacctcgg
agtaagatgggaaaagaccttttggctgttctttctgattccggaaagctctcgtttctc
tcatttagcaatgaaatgcacaggttcttgcccatacaacatgttcaactttctagtcca
ggaaactcgaggactcaacttggaagaatgctcactgtagattctagtggtctctttctt
gctgtcagtgcatatcatgatcgctttgctctattttccctctcatcatcgtctatggct
gatattattcatgagaggattttttatccttctgaagacggagggaagactagctctgta
caagaattatctggtactatttggagcatgtgtttcatttctaaaggttttaatgaatcc
aagggttatgatcctgttcttgccattgttttaaataggaaaggatctctcctgaatgag
ttggtcttatttagatggaacatcaaagaggaatccatatgtttaatatcagagtatgtc
gaagctggggctctagcacatagtattgttgaagttcctcactcctctggatttgccttt
ctgtttagaattggtgacgctctcttaatggatctcagagatcctcaaaacccttgctgt
ttggttaggacatccttagatctggttcctcctgcttcattagtggaagaacattttgtt
gaagagtcgtgtagagtacaagatggagacgatgagggtctttctaacgttgctgcatct
gctttgttaaagcttagcgattgggatccaatgttcatagataccgaaagcgatattgga
aagttgagttctaagcatgtctcttcatggacttgggagccggatcataactataatccc
cggatgattatttgcttagatgatggtgaatttttcgtgtttgaactcatatatgaagat
gatggtgttaagattaatatatcagagtgtttatacaaaggcttaccgtgcaaagaaata
ttatgggtggaaggtggattcctggccacgttttccgaaatggcggatggaacggttttc
aaattgggaaaagagaagctacattggatgagttccattcaaaacattgctccgatcttg
gatttctcggttgtggatgaccagaacgagaaacgagaccaaatgtttgcttgctgtggc
gttacgcctgaaggctctttaaggattattcgcagtggcgttaatgtagaaaagcttctg
aaaaccgcgcctgtttatcaaggaataactggtacttggactgttaaaatgaagcttcct
gatgtgtaccattcatttcttgttctgtcttttgttgaggagactagggttttatcagtt
ggattaagttttaaagatgtcactgattcagttggtttccagcctgatgtctgcaccttg
gcctgtgggcttgttgccgatggtttgttggtgcagattcaccaagatgcagtaaggctg
tgcatggccaacatggatggttcttcaccgtttgtctcctcttggtttccagaaaatgtc
agtatcagcttgggggcagttgctgaagatctgatagttgtgtctacctctaacccttgt
ttcctgtctgttcttggggtcagatcagtatcatctcactgctgcgaaatctacgaaatt
caacgggtggaactgcagtacgaagtttcctgcatctcaatccctcaaaaatctattggg
aagaagagatgcaaagctgcgattctttctggtatggagcgaggctatacgtttttgatc
ggcacacataagccttctgttgaggtcctctccttctcagaagatgacggtgggggtctt
agagtccttgcctctgggatggtatcgctaacgaatacaatgggaactgctattcgtgga
tgtattcctcaggatgtaagactcgtgttagttgatcaagtctatgttctttctgggcta
agaaatgggatgctgcttcgttttgagtggcctcccttttcacattcatccggcttgaat
aaagaagagatggacatagttgtgggtgaaagggagaatttacccatcgaccttgtgtta
attgccacccgacgtataggcatcacacctgtttttctggttccgttcagtgattcacta
gattcagatatcatagcgcttagtgacaggccatggttgttgcacacagctcggcaaagc
ctttcctacacttccatctcattccaagcttctactcatgcaactcctgtatgctcgtca
gaatgccctcaaggcattctttttgttgcagagaactctttacatctggtggagatggtg
catagcaaacggcttaatgcgcaaaagtttcaccttggaggcactccgcgaaaggttatc
taccatagtgaaagcaaactactgattgtgatgagaactgatctgtgtgatgctggtacg
tctgatatatgctgcgtggacccgctcagtggatcagtgttgtcatcctacaagctcaaa
cctggagaaactggaaaatcgatggagcttgtacgcgtgggaaatgagcaagtccttgtg
gttgggacgagtttgtcatctggtcctgctatactacccagcggtgaagcagaaagtaca
aaaggacgaatactcattctctgcttagtacacactcaaaactcggacagtggttcaatg
acaatctgttcaaaagatggtttatcttcccagcgtacatcaccttttcgtgatgaacaa
ctatcaagtagtagtctctgcagcagtccagatgataacagctacgatgatgatatcaaa
cttgacgaagctgaaacgtggcatttaaaattggcatctgcaaccacttggccgggtatg
gtacttgcgatctgtccgtaccttgatcgtttcttcctggcgtctgctgggaatgccttt
tatgtgtgcggtttcccgaacgatagtcctgataaaatgaagaggtttgcggtggggagg
actcgtttcatgataacatctctgcgcacgtacttgactagaatcgtcgttggggattgc
cgtgatggtgttctgttttattcttatcatgaggatgtgaagaaacttcaccaagtatat
tgtgatccagcgcagcggttagttgctgattgctttctaatggatgtcaattctgttgct
gtatctgatcgcaaggggagtatagctatcctgtcttgcaaagatcattcagactttgag
tattcaaatccggaatccaacctgaatctaaactgtgcttatcacatgggtgaggttgcc
atggctatcaaaaagggtggcagcatttacaaacttccagctggtgatgtgctgcgaagt
tatggtcttagtaaaagcactgacgctgctgatgatacaatcatagctggcacactattg
ggaagtatattcgtctttgctcctatttcaagggaggaatatgaactcctagaagccgtc
caagcaaagcttgtggttcatccgctgactgctcctgttcttggtaacgatcacaaggag
ttccgaggtcgagagaatccgtcccaagcgacaaagattctggacggtgacatgcttgct
cagttcttggaacttacaaatagacagcaggagtcagttttatctacacctcagccgtca
ccaagctcattaaaagcaagttcaaaacaatgtccttctccgcctctaatgctgcaccaa
gttgtacaattgctcgagcgtgtccattacgctctgcactaa
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