Brassica rapa (field mustard): 103859451
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Entry
103859451 CDS
T03449
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
brp04141
Protein processing in endoplasmic reticulum
brp04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103859451
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103859451
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
103859451
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
brp01009
]
103859451
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103859451
03009 Ribosome biogenesis [BR:
brp03009
]
103859451
03110 Chaperones and folding catalysts [BR:
brp03110
]
103859451
04131 Membrane trafficking [BR:
brp04131
]
103859451
03051 Proteasome [BR:
brp03051
]
103859451
03029 Mitochondrial biogenesis [BR:
brp03029
]
103859451
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
brp04147
]
103859451
Protein phosphatases and associated proteins [BR:
brp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
103859451
Spliceosome [BR:
brp03041
]
Complex B
Other components
Prp19 complex
103859451
Complex C
Prp19-CDC5 complex
103859451
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
103859451
Chaperones and folding catalysts [BR:
brp03110
]
Heat shock proteins
HSP70 / DNAK
103859451
Membrane trafficking [BR:
brp04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
103859451
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
103859451
Proteasome [BR:
brp03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
103859451
Mitochondrial biogenesis [BR:
brp03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
103859451
Exosome [BR:
brp04147
]
Exosomal proteins
Proteins found in most exosomes
103859451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
Hydantoinase_A
DACNG
Motif
Other DBs
NCBI-GeneID:
103859451
NCBI-ProteinID:
XP_009135236
LinkDB
All DBs
Position
A03:complement(17438220..17440809)
Genome browser
AA seq
652 aa
AA seq
DB search
MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPTNTVFDAKRLIGRRFSDPSVQADMRHWPFKVISGPAEKPMISVNYKGEEKQFSA
EEISSMVLTKMREIAEAYLGTSIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEP
TAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKHKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFY
TTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSNVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLI
PRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKK
KVDAKNALENYAYNMRNTIKDEKIASKLEAADKKKIEDAIDQAIEWLDGNQLAEADEFED
KMKELESVCNPIIARMYQGGAGGDMGGGPGGMDDDVPAGGSGGAGPKIEEVD
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtaaaggcgaaggtccagcgatcggtatcgatctcggtactacctactcttgc
gttggcgtgtggcagcatgaccgcgtcgagatcatcgccaacgatcaaggcaaccgcaca
actccttcctacgttgccttcactgacagcgagcgtctcataggcgatgctgctaagaat
caagtcgctatgaaccctaccaacaccgtctttgatgctaagcgtcttattggcagaaga
ttcagcgacccctctgtccaagcagacatgaggcactggccattcaaagtcatctccggt
ccagccgagaagccaatgatcagcgtcaactacaagggagaggagaaacagttctcagca
gaagaaatctcctccatggtcctcaccaaaatgcgcgagatagcagaagcatacctcggc
acatccatcaaaaacgctgtcgtcacggtccctgcctacttcaacgactctcagcgtcaa
gcgacaaaggacgctggagtcatctctggtctcaacgtgatgcgtatcatcaacgagcct
acagctgctgctatagcctacggtctcgacaagaaggcgtcgagtgttggtgagaagaac
gtgctgatattcgacttgggaggtggtacgttcgatgtctcgttgctgacgatcgaggaa
gggatcttcgaagtgaaggcgacggctggtgacactcacctcggaggtgaggacttcgac
aacagaatggttaaccacttcgtccaagagtttaagaggaagcacaagaaggacatcacg
ggtaacccgagagctctccgcaggctgagaacagcctgcgagagagcgaagaggactctt
tcgtccaccgcgcagacgacgatagagattgactctctctacgaagggatcgacttctac
acgaccatcacgcgcgcgaggttcgaggagctgaacatggatctcttcagaaaatgtatg
gagccggtggagaagtgtctgagagacgctaagatggataagagcaacgttcatgacgtg
gtcctcgtcggcgggtccaccaggatccccaaagtgcagcagcttctccaagattttttc
aacgggaaggagctttgtaagagtattaaccctgatgaggccgtcgcgtacggcgcggcg
gtccaggctgcgatcttgagtggggaagggaacgagaaggttcaagatttgctgcttctt
gacgtcactcctttgtctttaggtttggagactgccggtggggttatgacggttctgatc
ccgaggaacacgacgattccgacaaagaaggagcagatcttctctacttactcggacaac
cagcctggagttttgatccaagtctacgaaggagagagagctaggaccaaagacaacaat
cttttagggaagtttgagctcagcggcatccctcctgcaccaagaggtgttcctcagatc
acagtctgtttcgacatcgatgctaacggcatcctcaacgtctcagcggaagacaagact
actgggcagaagaacaagattaccatcactaacgataaagggaggctgtccaaggaggag
attgagaagatggtgcaagaagcggagaagtacaaggctgaggatgaggagcataagaag
aaggttgatgccaagaatgcgttggagaactatgcgtataatatgaggaacacgatcaag
gatgagaagattgcgtctaagcttgaggcggcggataagaagaagattgaggatgccatt
gatcaggcgattgagtggttggatgggaaccagttggctgaggcagatgagtttgaggat
aagatgaaggagcttgagtctgtttgtaatccgattattgcgaggatgtatcaaggtggt
gctggtggcgatatgggtggtggtcctggaggtatggatgatgatgttcctgctggtgga
agtggtggtgctggaccaaagattgaagaagttgattaa
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