Brassica rapa (field mustard): 103859720
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Entry
103859720 CDS
T03449
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
103859720
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
brp04040
]
103859720
Ion channels [BR:
brp04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
103859720
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
103859720
NCBI-ProteinID:
XP_033144425
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Position
A03:18828516..18832959
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AA seq
686 aa
AA seq
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MASPMENDDVPMLPASDTSSSSRTMPFTSRSRSTSLANNSSTIDVFNSSTVVLGYTDPLG
TQRRPPLVQMSYPLSSTRSPEPRFALPPPSTGASYDSVGASSSQPNERNHAYSRKAAQSR
TPRVFATSDFTLHNALDDDAKGWAKYFSGIIYPESNYVQLWTTFFVLSCLCSIFVDPLFF
YPIEIYKEERCIKIDWWTTNVFVIVRTITDGLYALNIVLQFRLAYVDLESTVAGAGQLVD
DPKKIASHYLRGKFLTDFFIVLPIPQILLLWIIPQLLGTSGANNTKNYLRAAILVQYIPK
LRRLFPLLAGQTPRGFRFDSALAKFFINLLTFMLAGHVIGSCWYLLGLQRVNQCLRDACG
NSSFECKQLIDCGRENRTEVLHAWKINVSANACFQEDGFDYGIYLKAVNLTSNRTRWYRR
YSYSLFWGFQQISTLAGNQVPSYFFGEVLFTMCIIGLGLFLFALLIGNMQNFLQSLGRRD
TEMTVRRRDVEQWMSHRRFPKDIRNCFYMFRRVREVERLNWNATRGVNEELLFENMPDDL
QRDIRRHLFAFLKKVRIFSEIDESILDAMRARLKQRTYLKNNKVLHRGGVVKKMVFILRG
KMESIGEDGYRTLLSEGDVCGEELLTWCQERSSVNPDGTIIRMPSKGLLSSRDVWCVTNV
EAFSLSVADLEDITSLFPNLEIPKEP
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcccatggagaacgatgatgttcccatgcttccagcttcagacacatcatca
tcatctcgtactatgcctttcacttccaggtcacgtagcacttcccttgcaaacaattct
tccaccattgacgtattcaacagctcgacagttgttttaggctacacagatcctcttgga
acccagagacggcctccattagtgcaaatgagttaccctctttcctctactcgtagtcct
gagcctcgctttgctcttcctcctccttctactggtgcttcttatgattccgttggtgcc
tcctcctctcagcccaatgagaggaatcatgcctacagccgcaaagctgctcaaagccgc
actcccagagtttttgccacttctgatttcacgctccataacgctcttgatgatgatgct
aaaggctgggctaaatacttttctggaatcatatatcctgagtctaattacgttcagctc
tggactacattctttgtcttatcatgcttgtgttctattttcgtagatcccctctttttc
taccccatagaaatatataaggaggagagatgcattaagatcgactggtggacgactaat
gtatttgtaattgtgagaactataacggatggcttatacgctttgaacatcgtgcttcag
ttccgattggcatatgtagatcttgagtctacggttgctggtgctggccagttggttgat
gatccaaaaaaaattgctagccattacttacgaggaaaatttttgacagactttttcata
gtgttgccgattccacagatattgctattatggataataccacaactgttaggcacatct
ggggcaaacaatacaaagaactatttacgtgctgcaattcttgtccaatacattccaaaa
ttacgtaggctttttcctcttctagccggacaaacaccaagagggttcagatttgattcg
gcattggccaagttttttataaatcttctcaccttcatgcttgctggtcatgttattggc
tcttgctggtatcttttgggtctgcagagagttaatcagtgccttcgagatgcttgcgga
aattctagttttgaatgcaaacaactaatagattgtggtcgtgaaaacagaacggaagtt
ttacatgcatggaaaattaatgttagtgccaatgcttgttttcaagaggatggttttgat
tatggaatctatttgaaggcagtcaatctcactagtaatcgtactcgttggtacagaaga
tacagttactctcttttctggggatttcagcaaatcagcacgcttgctggaaaccaagtc
ccaagttacttttttggggaggtcttatttactatgtgtatcatcggactggggcttttc
cttttcgcgcttcttatcggtaatatgcaaaacttccttcagtctctcggccgaagggat
acagaaatgactgtaagacggcgtgatgtggagcaatggatgagccatagacggtttcca
aaagacataagaaattgtttctatatgttcaggagagtgcgagaggttgagaggctcaac
tggaatgctactagaggagttaacgaagaattgctctttgagaatatgcctgatgacctt
cagagagatataagacgtcacctcttcgcatttctcaagaaggtgaggatattttcggag
attgatgaatctatcttagatgccatgcgtgcgaggctgaaacagaggacttacttaaag
aataacaaggtcttgcaccgcggaggtgtagttaagaaaatggtattcatattgagaggt
aagatggagagcattggagaagacggttatcgtactcttttatcagagggagacgtttgt
ggtgaagaacttctcacttggtgccaagaacgctcttctgtaaacccagatgggactata
ataaggatgccatcaaagggactgcttagcagcagagatgtttggtgtgtgacaaacgtg
gaggcgttttcactcagtgtagcagatcttgaagacatcacgagcttgttccccaatctc
gagattcctaaggagccataa
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