Brassica rapa (field mustard): 103859754
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Entry
103859754 CDS
T03449
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
103859754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brp03400
]
103859754
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
103859754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
ApoL
Mating_N
DUF2465
DUF6437
Motif
Other DBs
NCBI-GeneID:
103859754
NCBI-ProteinID:
XP_009135581
UniProt:
M4CBX9
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Position
A03:complement(18994367..18998824)
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AA seq
937 aa
AA seq
DB search
MEGNFEETNKLPELKLDAKQAQGFLSFFKTLPNDLRAVRFFDRKDYYTAHGENSVFIAQT
YYHTTTALRQIGSGANALSSVSVSKNMFETIVRDLLLERNDHTVELYEGSGSNWRLVKAG
SPGNIGSFEDVLFANNEMQDTPVVVSLFPSFQESRCVVGMAYVDLTKRVLGLAEFLDDSR
FTNLESSLVAIGAKECIFPAESGKTNECKSLHESLERCGVMTTERSRQEFKGRDLESDLK
RLVKGNIEPVRDLISGFELATPALGALLSFSELLSDEGNYGNFTIRRYDIGGFMRLDSAA
MRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEITMRLDIVQCF
VEEAGLRQDLRQHLKRISDVERLVRSLERRRGGLQHIIKLYQSTIRLPFIKTSLQQYTGE
FSSLISKRYIKRLEALSDADHLGKFIDLVEYSVDLDQLENGEYMISSSYDATLSSLKDQK
ELLEQQIHELHKKTAIELDLPVDKALKLDKAAQYGHVFRITKKEEPKIRKKLTTQFLVLE
TRKDGVKFTNTKLKKLGDQYQSVVDDYKSCQKELVDRVVQTVASFSEVFEELAGMLSEMD
VLLSFADLAASCPTPYCRPEVTSSDVGDIVLEGSRHPCVEAQDWVNFIPNDCRLVRGESW
FQIITGPNMGGKSTFIRQVGVTVLMAQVGSFVPCDKASVSIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKKAPTLFATH
FHELTALAQANSEVAGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFA
NFPESVVALAREKAAELEDFSPPSIVINNEESGKRKSREDDAEEVSRGAARAHKFLKEFA
EMPLDKMELKDSLKRLHELKEELAKDDVGCHWLKQFL
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtaacttcgaggagacgaacaagcttccggagcttaaattagatgctaagcag
gctcaagggtttctctctttcttcaaaaccctaccaaatgacttgagagctgttaggttc
tttgatcgcaaggattattacacagctcatggggagaactcagttttcattgctcagact
tattaccataccaccactgctctacgccagattgggagtggagcaaacgctctttcaagc
gtcagcgttagtaagaacatgtttgaaaccatcgtcagggatcttctcctggagaggaat
gatcataccgtggagctttacgagggaagcgggtcgaattggaggcttgtgaaagcgggt
tctcctggaaacattggtagctttgaagatgttttgtttgcaaacaacgagatgcaggac
accccggttgttgtctccttgtttccgagttttcaggagagtagatgcgttgttgggatg
gcttacgttgatctcacaaagagggttcttggactagctgagtttcttgatgatagccgt
ttcactaacctggagtcttctctcgttgctataggcgcgaaagaatgcatctttccagct
gagtctggcaaaactaatgagtgcaagagtttgcatgagtctcttgagaggtgtggtgtg
atgacaacggagaggagtcgtcaggagtttaaaggaagagatttagagtcagatctaaag
aggttggtgaaggggaacattgagccagttagagatttaatctctgggtttgagcttgcg
actcctgctcttggtgcattactctctttctctgagcttctctcggacgaaggtaactac
gggaacttcacaatacgcagatacgacatcggcgggttcatgagactcgactctgcagca
atgagggcgttgaatgtgatggagagcaaaactgacgcaaacaagaacttcagtttgttt
ggtctcatgaacagaacgtgcaccgcagggatggggaagagactgcttcatatgtggctc
aagcaacctcttgtggatttgaatgagattacgatgagattagatatagttcagtgcttt
gttgaagaagctgggttaagacaagatcttagacagcatctgaaacgcatctcagatgtt
gagaggcttgtccggagtctcgagaggagaagaggcggtttacagcacattatcaaactc
tatcagtcaactataaggctacccttcatcaaaacatcactgcaacagtacaccggagag
ttctcatcactcatcagcaaaagatacatcaaaaggcttgaggccttatcagacgcagat
cacctcggcaagttcattgatctggtagagtactctgtagaccttgaccagctagagaac
ggagagtacatgatctcctcaagctacgacgccacattgtcatctctcaaagatcagaaa
gagttgctggagcagcagatacacgaactgcacaaaaagacagctatagaactcgatctt
ccggtggacaaggctttgaaactcgacaaagcagcgcagtatgggcatgtgttcaggatc
acgaagaaggaagagcctaagatcaggaagaagctgacaacacagttcttggtgctggag
actcgcaaagacggagtgaagtttacgaacacaaagcttaagaaacttggggaccagtac
caaagtgttgtggacgattataagagctgtcaaaaggagctcgttgatcgtgtagttcag
actgttgccagcttctccgaggtgtttgaggagctagcagggatgctctctgagatggat
gttttgctaagctttgctgatttggctgctagttgccctacaccatactgtagaccagaa
gtcacctcttcggatgttggagacattgtactagaagggagcagacatccatgcgtagaa
gctcaagattgggtgaactttataccaaatgattgtagacttgtgagaggggagagttgg
tttcagataataacgggacctaacatgggagggaagtccactttcattcgccaagttggt
gtgactgttctgatggctcaagttggttcctttgttccttgtgataaagcttcagtttcc
atcagagactgtatctttgcacgtgtaggagcaggcgattgccaactgcgtggagtgtct
actttcatgcaagaaatgcttgaaactgcttcgatattaaaaggagctactgataagtca
ctgataattatcgatgaactgggacgtggaacatcaacttatgatggctttggtttagcg
tgggctatatgtgagcatctggttcaagtgaagaaagctcctactctgtttgctactcac
ttccatgaacttactgccttggctcaagcaaactctgaggttgcaggtaacaccgttggt
gttgcaaacttccatgtcagtgcacacattgatacagaaagccgcaaactcaccatgctt
tacaaggttgaaccaggggcatgtgaccagagctttgggatccatgtggctgagtttgcc
aacttccctgaaagcgtagtggcgctagcaagagagaaagctgccgaactagaagatttc
tctccaccttccatagttatcaacaatgaggagagtgggaagagaaagagcagagaagat
gatgcagaggaagtatcaagaggggcagcacgagctcacaagtttctgaaagaattcgca
gagatgccacttgataaaatggagctaaaagattcgcttaaacgcctacatgagctgaaa
gaagagctagcgaaagatgatgtgggctgccactggctcaagcagttcctctga
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