Brassica rapa (field mustard): 103859759
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Entry
103859759 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 51
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103859759
03009 Ribosome biogenesis [BR:
brp03009
]
103859759
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103859759
Spliceosome [BR:
brp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103859759
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
90S particles
Helicases
103859759
Pre-60S particles
103859759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
103859759
NCBI-ProteinID:
XP_009135586
LinkDB
All DBs
Position
A03:complement(19029946..19033554)
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AA seq
571 aa
AA seq
DB search
MVELEKKSSDEVKKRIRKRNRGKKNEQQRAEEEEETHLVEEKADEVHNKKEKKVTKVKSQ
GGDKTEEEVEAKEEEEETKMVVVGKGIMTNETFESLELSEQTFEAIKTMGFEHMTQIQAG
SIPPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTK
NVAEELLKHHSLTVSMVIGGNNRRTEAQRIANGSNLLIATPGRLLDHLQHTKGFIYKHLK
CLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVQDLARVSLTSPVLVDVD
DGRRKVTNEGLEQGYCVVPSEKRLLLLISFLKKNLNKKIMVFFSTCKSVQFHAEIMKLIN
VESCDIHGGLDQNRRTKTFFDFMKAEKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEY
IHRVGRTARGEGAKGKALLVLIPEELQFIRYLKAAKVPVKELEFNEKKLLNVRSALEKYV
ANDYNLNKIAKEAYRAYIAAYNSHSLKDIFNVHRLDLQAVALSFCFSSPPKVHLNIESGA
GKVRKARNQQGRNGFSPYSPYGKGKSTPKEA
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggttgagctggagaagaagagcagtgatgaggtgaagaagaggatcagaaagcgtaac
cgtgggaagaagaatgagcagcaaagggctgaagaagaagaagaaacacacttggtagag
gagaaggctgatgaagtccataacaagaaagaaaaaaaggttacgaaagtgaagtctcag
ggaggagacaaaaccgaggaagaggtggaagcaaaggaagaagaagaagagacgaagatg
gttgttgttgggaaagggataatgactaatgagacttttgaatccttggagttgtctgag
cagactttcgaagctatcaagacgatgggctttgagcacatgactcaaattcaagctggg
tctattcctccccttttggaagggaaagatgttcttggtgctgccaggactggttccggt
aaaacccttgctttcctcataccggctgtggagctgctctttaaagagcgtttctctcct
cgtaatgggactggtgtcatcgttatttgccccactagagaacttgctatccagacaaaa
aatgtggcggaggagctactcaagcatcattcactgacggtcagcatggttattggtggc
aataacagaaggacagaagctcaacgtattgcgaatggttctaatttgctgattgcaact
cctgggcgtcttcttgaccatcttcaacatacaaagggtttcatttataaacacctcaag
tgccttgtgatcgatgaagctgataggatactggaagaaaattttgaggaagatatgaac
aagattctaaagattttaccgaagactaggcaaaccgcactattctctgccacccaaacc
tccaaggttcaagatcttgcccgggtgtcattgacgtctcctgttcttgttgatgtcgat
gatggtagacgcaaggtgacgaatgaaggattggagcaaggctactgtgttgttccgagc
gagaaaaggcttctccttctaatctctttcttgaaaaagaacctaaacaagaaaataatg
gtcttcttctcgacgtgcaagtcggttcagttccacgccgagatcatgaaactcatcaac
gtcgagagctgtgacatccatggagggctggatcagaaccgaagaactaaaacctttttc
gactttatgaaagcagagaaaggtatcttgctgtgtactgatgttgctgctcgtggtctc
gacattccttccgtggattggattatacagtatgatcctccagacaagccaacggagtat
atccatagggttggtcgaacagcccgtggagaaggagcaaagggaaaggcattgcttgtc
ttgatccctgaagagcttcagtttattcgttacctcaaggctgcaaaagtacctgtgaaa
gagcttgagttcaatgagaagaagcttttgaatgttcggtctgctctggagaagtatgtt
gccaacgactataatctgaacaagatagccaaggaagcgtaccgggcttacatcgcagca
tacaactcgcattctttgaaagacatcttcaatgttcaccgacttgatcttcaggcggtt
gctctatcgttctgcttctcttcgccgccaaaagtgcatctgaacatagaaagcggagct
ggtaaggtgaggaaggcgaggaatcagcaaggccgcaatggcttctctccttacagtccc
tatggcaaaggcaagtccacacctaaagaggcatga
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