Brassica rapa (field mustard): 103860073
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Entry
103860073 CDS
T03449
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103860073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103860073
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103860073
Spliceosome [BR:
brp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103860073
Complex B
103860073
Complex C
U2 SnRNP specific factors
103860073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103860073
NCBI-ProteinID:
XP_033142831
LinkDB
All DBs
Position
A03:complement(12029163..12034173)
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AA seq
723 aa
AA seq
DB search
MSIRNSTRFRGGDNSEDADVDNIDFTENEEDEEDDVDNGASASANDEIDPLDAFMEGIHE
EMKAAPPPKPKEKVERYKDDEDDDHVVSFLKAKKDLGLTLAADALNAGYNSDEEVYAAAK
AVDAGMLEYDSDDNPIVVDKRKIEPIQALDHSSIDYEPINKDFYEEVESISRMSEQEALD
YRKSLGIRVSGFDVPKAVKTFEDCVFSTQIMSAIKKQAYEKPTTIQCQALAVVLSGRDVI
GIAKTGSGKTAAFVLPMIVHIMDQPELQREEGPIGVICAPTRELAHQIFLEAKKFSKAYG
LRVSAVYGGMGKHEQLKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFD
LGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEAGMANEDITQV
VNVIPSDADKLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNGFKVAALHGDKDQ
ASRMETLQKFKSGIYHVLVATDVAARGLDIKSLKTVVNYDTAKDMDMHVHRIGRTGRAGD
KDGVAYTLVTQREARFAGELINSLVAAGQNVPQELMDLAMKDGRFKSKRDGRKGGGKKGG
GRGGGNRGVRGVDFGLGIGFNSESSGTSSQAAPSRXGVINSVRTGVMAQFKNSFVAATPS
NQAYPNKRPALTGFVSGGAIGGDMGRAQTQTPPVATSHHSSQKNTQSSEDRPRERKRRSG
WDS
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtctattcggaactctacgaggtttcgcggcggagataactcagaagacgccgatgta
gataacattgattttacagaaaacgaagaggatgaagaagacgacgttgacaacggcgcc
tctgcatctgctaacgacgagatcgatccactagacgcattcatggagggaatccacgag
gagatgaaggctgctccacctcccaagccaaaggagaaagtggagaggtacaaggacgac
gaagacgacgatcatgtcgtgagtttcctcaaggccaagaaggatttggggctcacgcta
gctgcggacgcgcttaacgctggttacaactccgacgaggaggtgtatgctgcagctaag
gcagtagatgctgggatgctggagtacgattccgatgataatccgattgttgtggataaa
aggaagatcgagccgattcaagcgcttgatcatagttcaattgattacgaaccgatcaat
aaggacttctacgaggaggttgaatcaatatccaggatgagtgaacaagaagctttggat
tatcgtaagagtttggggattcgtgtgtccggatttgatgttcctaaggcagtaaagacc
tttgaggattgtgttttttccacacagatcatgagtgctatcaagaaacaagcttatgag
aaacccactaccatacagtgtcaagctttagcggttgtgctctctggtcgagatgttatt
ggcatagccaaaactggttcagggaagaccgcagcttttgttcttcccatgattgttcat
attatggaccagccggagcttcagagagaagaaggtcctattggtgtcatatgtgcccca
accagagagctggcgcatcagatattcttggaagcgaagaaattctcgaaagcgtatggc
ttacgagtctcagctgtgtacggtggaatggggaaacatgagcagttgaaagaactcaag
gcgggatgcgagatagttgttgctactcctggaaggttgatagatatgctgaagatgaag
gctttgacaatgatgagagcctcgtatctggttcttgacgaggctgatcggatgtttgac
cttggttttgagccgcaagtgaggtctatcgttggccagattcgtccagatcgccagact
ttactgttttcagccactatgccttggaaagttgaaaagttagctagggagatcctttcg
gatcccattagagtcactgttggtgaagctgggatggctaatgaagatattacacaggtt
gtcaatgtgataccatcagatgctgacaaacttccttggctacttgagaagctacctgga
atgattgatgaaggtgatgtattggttttcgcttctaaaaaggccacggttgatgagatc
gaagcgcagctgactctgaacggttttaaagttgctgcccttcacggtgataaagaccaa
gcatcacgaatggaaacgttgcagaagttcaaatctggaatctaccatgtgctagttgcc
accgatgttgctgcccgaggtctcgacattaaatcgcttaagacagtggttaactacgac
actgctaaagacatggacatgcatgtacatcgtattggtagaacaggtcgtgctggtgac
aaagatggggttgcctacacacttgttacgcagagagaggctagatttgctggtgaactg
attaacagtctggttgctgctggtcagaatgtgcctcaagaactcatggatctcgccatg
aaggatggacgattcaagtccaagcgtgacggaagaaaaggaggtgggaagaaaggtgga
ggacgaggtggtggaaatagaggagtacgaggagttgattttggtcttggtattggattt
aactcggaatcaagtgggacatcgtctcaagctgcaccaagtaganaaggggtgatcaat
tctgtgagaaccggagtaatggcccaattcaagaatagctttgtggctgctacgccatca
aaccaagcttatccgaacaagagacccgccctaacgggatttgtctcaggtggggccatt
ggtggggacatgggtagagctcaaactcaaactcccccagtagcaactagtcatcactcg
agtcaaaagaatacacagagttctgaagatcggccaagagagaggaaaaggagatctggt
tgggatagttga
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