Brassica rapa (field mustard): 103860352
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Entry
103860352 CDS
T03449
Name
(RefSeq) protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103860352
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
103860352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_19
TPR_14
TPR_11
TPR_16
TPR_17
TPR_6
TPR_CcmH_CycH
TPR_7
TPR_9
ANAPC3
ARM_TT21_N
TPR_10
ARM_TT21_C
ARM_TT21_5th
TPR_Slam
ARM_TT21_4th
Fis1_TPR_C
NatA_aux_su
SPOB_a
UBA_N4BP1
Motif
Other DBs
NCBI-GeneID:
103860352
NCBI-ProteinID:
XP_009136188
LinkDB
All DBs
Position
A03:21166177..21172793
Genome browser
AA seq
1088 aa
AA seq
DB search
MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFR
QILEEGSSSDIDEYYADVKYERIAILNALGAYYCYLGKTETKHKEKEDYFILATQYYNKA
SRINMCEPTTWVGKGQLLLAKGEIDNAYQAFTIGLGTSEDVPALLGQASVEFHRGRFSES
LQLYKRVLQLHPGCPAAVRLGIGLCRYKLGQLDKARQAFDRVLQLDPDNVEALVALGIMD
LQANDSLGMRKGMEKMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVSTHG
PTKSHSFYNLARSYHSKGDYEKAGMYYMAAIKETNNKPQEFVFPYFGLGQVQLKLGELKG
SVSNFEKVLEVYPDNCETLKALGHLYTQLGKTDKALEYMRKATKLDPRDAQAFVGLGELL
ISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEKEEFESALDNFKEALGDGIW
ISFLDEKEKLEETGVSVQGYKDTGIFHRLIENGHSVDVPWNKVTTLFNMARLLEQLHKTE
TATFLYRLILFKYPGYIDAYLRLAATAKAQNNLPLAIELVNEALKVDDKNPNALSLLGEL
ELKNDDWVKAKETLRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEKAKE
LYTKVLTQHSSNMYAANGSGIILAEKGQFDIAKDIFTQVQEAASGSVFLQMPDVWVNLAH
VYFAQGNFALAVKMYQNCLRKFFYNTDSQILLYLARTHYEAEHWQECKKTLLRAIHLTPS
NYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVTEAENAVRVFTQLSAASDLQVHGFDS
KKIQTHVHYCTHLLEGAKVHREAAEREELQNRQRLEVARQAALAEEARRKAEEHRKYQLE
KRKQEDELRRLKQEEEKIQRIKEQWKSNTHGSKRKDRAEDDDGEGRPSERKRKKGGKRRK
KDKSSRARHYEDDDEEAPTMDDHNEVEDEDANTNYNREEENQEAEEPVDDDDAHDLLAAA
GLEDPDADDDDGVPASVARRRRALSSSDEEGELMESKPNSSPQKENSPGRQESNVEEEEE
DANLNDEE
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgtgtacatccccgttcagaattcagaagaagaagttagggttgttcttgac
cagctccctcgtgacgcctccgatatcctcgatatcctcaaagccgaacaagctcctctc
gatctctggctcatcatcgcgagagagtacttcaagcaagggaaaattgatcagttccgt
caaatattggaggaaggctcaagctctgatattgacgagtactatgctgatgttaagtac
gagaggatagcaatcttgaacgctctcggtgcctattactgctaccttggtaaaaccgag
actaaacacaaggaaaaagaagattattttatcttggctactcaatactacaacaaagcc
tccaggatcaatatgtgtgaacctaccacttgggttggcaaaggtcagctcttactggct
aagggtgaaatagataatgcatatcaggcatttacgattgggttaggcacttctgaggac
gttcctgctcttctgggtcaggcttctgtggaatttcaccgtggacgtttttctgagtca
ttgcaactgtacaagagggtcttgcaactacatcccggctgtcctgctgctgtgagactg
ggaattggtctttgtcgttataagttgggacaactagataaagcacggcaagcgtttgat
cgcgttttgcagctagatcctgataatgttgaagctcttgtggcacttgggatcatggat
ttacaagcaaatgattctttaggaatgaggaaaggaatggagaaaatgcagcaagcgttt
gagatttatccctactgcgcatcagccctgaattatttagccaatcacttttttttcacc
ggccagcactttctcgttgagcagctgactgaaacggcactagctgtctcaactcatggg
ccaactaagtcgcattctttttacaatttagcacggtcatatcatagcaagggggactat
gaaaaggctgggatgtactatatggcagccatcaaagaaactaacaataagccacaagag
tttgtgtttccctactttggtttgggtcaagtacaactaaagttaggggagctcaaagga
tcagtatccaactttgagaaagtattagaagtctaccctgacaactgcgagactctgaag
gctctcggacacttatacactcagcttggaaaaactgataaggcccttgagtacatgcgg
aaggccacaaaacttgatccacgtgatgcccaggcatttgttggccttggtgagctgctg
atatcatctgacactggggctgcacttgacgccttcaaaatggcacggacgctcatgaaa
aagggagggcaagaagtgcctatagaagtcctgaatgacattggtgctttacattttgag
aaagaagaatttgagtctgcgctagacaattttaaggaggctctgggagatggaatatgg
attagcttccttgacgaaaaagaaaaattagaggaaacaggtgtatctgttcaagggtac
aaggatactggaattttccataggctgattgaaaatggtcactctgtcgatgtaccttgg
aacaaagtcacaaccttgtttaacatggctagattacttgagcagttacacaaaactgaa
acagcgacttttctgtatcggttgatacttttcaagtatcctggctacatagatgcttat
ttgaggcttgctgcgactgccaaagctcagaacaaccttcctctagctattgaactggtg
aatgaagctctgaaggtggacgataaaaatccaaatgctttgtctctgcttggtgaattg
gagcttaaaaatgatgactgggttaaggcaaaagaaacccttcgagctgctaatgatgcg
actgatgggaaggattcatacgctattctttctctgggaaactggaactactttgcagca
atgcgcaatgagaaaagaaatccaaaattagaagctacacatctggagaaggccaaggaa
ctttatactaaagtcctgactcaacatagttccaacatgtacgctgccaacggttctggc
attatactagcagagaaaggacaattcgatatcgccaaggatatttttactcaggttcaa
gaagctgcaagcggaagtgtgtttcttcagatgcctgatgtatgggtgaatctggctcat
gtgtacttcgctcaagggaattttgccttagccgtgaaaatgtatcaaaactgcttgcgg
aagttcttttacaacacagactctcaaattcttctttacttggcccgtacccactacgag
gctgagcattggcaagagtgcaaaaagacactgttaagggccattcacttgactccttcg
aattacacattcagatttgatttgggtgctgttatgcagaaatcatcatcttccacactt
caaaagaagaagagaacagctgatgaggtgcgctcaacagtgacagaagcagagaacgct
gttcgcgtgttcactcagttgtctgctgcttcagacctacaggttcatgggtttgatagt
aagaaaatacaaacccatgttcactattgcacacaccttttagaaggagcgaaagttcac
cgtgaagctgctgagcgcgaggagctacagaaccggcagagactagaagttgctcgtcag
gctgccttggcagaagaagcacgccgtaaagctgaagagcataggaaatatcagttggag
aaaagaaaacaggaagacgaactgagacgactcaagcaagaagaagaaaaaattcaacgc
ataaaggaacaatggaagagcaacacacatggatctaagcgtaaggatagagctgaagat
gatgatggggaaggtaggccgagcgagcggaaaagaaagaaaggtgggaagagaagaaag
aaggacaaaagctcaagggctcgacattatgaggatgatgatgaagaagcacctactatg
gatgatcataatgaagtggaagatgaagacgccaacaccaattataatagggaagaggag
aatcaagaagctgaggagcctgtggatgatgatgatgctcatgatcttcttgctgctgct
gggcttgaagatcctgatgctgatgatgatgatggggtacctgcttcagttgcaagacga
agaagggcactttcgtcatcagatgaagaaggtgaattgatggagagtaagccaaattca
agcccgcagaaagagaattctccaggaaggcaagagagcaatgtggaagaagaagaagaa
gatgctaacttgaacgatgaggagtag
DBGET
integrated database retrieval system
