Brassica rapa (field mustard): 103860487
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Entry
103860487 CDS
T03449
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37e
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
brp04141
Protein processing in endoplasmic reticulum
brp04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103860487
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103860487
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
103860487
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
brp01009
]
103860487
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103860487
03009 Ribosome biogenesis [BR:
brp03009
]
103860487
03110 Chaperones and folding catalysts [BR:
brp03110
]
103860487
04131 Membrane trafficking [BR:
brp04131
]
103860487
03051 Proteasome [BR:
brp03051
]
103860487
03029 Mitochondrial biogenesis [BR:
brp03029
]
103860487
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
brp04147
]
103860487
Protein phosphatases and associated proteins [BR:
brp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
103860487
Spliceosome [BR:
brp03041
]
Complex B
Other components
Prp19 complex
103860487
Complex C
Prp19-CDC5 complex
103860487
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
103860487
Chaperones and folding catalysts [BR:
brp03110
]
Heat shock proteins
HSP70 / DNAK
103860487
Membrane trafficking [BR:
brp04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
103860487
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
103860487
Proteasome [BR:
brp03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
103860487
Mitochondrial biogenesis [BR:
brp03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
103860487
Exosome [BR:
brp04147
]
Exosomal proteins
Proteins found in most exosomes
103860487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
Hydantoinase_A
DACNG
Motif
Other DBs
NCBI-GeneID:
103860487
NCBI-ProteinID:
XP_033143098
LinkDB
All DBs
Position
A03:21842693..21845109
Genome browser
AA seq
650 aa
AA seq
DB search
MSGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPINTVFDAKRLIGRRFSDASVQSDMKLWPFKIIPGPADKPMIVVSYKGEEKHFAA
EEISSMVLIKMREIAEAYLGVTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEP
TAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKSKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFY
SALTRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQGAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLI
QRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKK
KVEAKNALENYAYNMRNTIRDDKIGEKLPAADKKKIEDSVEEAIQWLDGNQTAEADEFED
KMKELESVCNPIIAKMYQGAGGEAGGPSGMDDDEAPPSAGGAGPKIEEVD
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtaaaggagaaggtccagctatcggaatcgatctcggcaccacctactcttgc
gtcggagtatggcaacacgaccgcgttgagatcatcgctaatgatcaaggtaacagaacc
accccctcttacgtcgccttcaccgactccgagaggttgattggtgatgccgccaagaat
caagtcgccatgaaccccatcaacaccgtcttcgatgcaaagagattgattggtcggaga
ttcagtgacgcatcagtccaaagcgacatgaagctatggcctttcaagatcatccctggc
ccagcagacaagccaatgattgtcgtctcttacaaaggagaagagaagcacttcgcagcc
gaggagatctcctccatggttctcatcaagatgcgtgagatcgccgaagcttaccttggc
gtcaccatcaagaacgctgtggtcactgtcccagcctacttcaacgactctcagcgtcaa
gctacaaaggacgctggtgtcatcgctggtctgaacgtgatgcgtatcatcaacgagccg
actgctgcggctattgcttacggtcttgataagaaggcgacgagcgttggggagaagaac
gttttgatttttgatctcggcggtggtacttttgatgtctcgcttttgactatcgaagaa
ggtatctttgaggtgaaggctactgctggagacactcatctcggtggtgaggactttgac
aacagaatggttaaccattttgttcaagagtttaagaggaagagcaagaaggatattagc
ggtaaccccagagctttgaggaggttgaggacggcttgtgagagagcgaagaggactctt
tcctccactgctcagaccaccatcgagattgactctctctttgaggggattgatttctac
tctgctctcacgcgtgctaggttcgaggagctcaacatggatctcttcaggaagtgtatg
gagcctgtggagaagtgtctgcgtgatgctaagatggacaagagcacggtccatgacgtt
gtcctcgtcggtggctccacccgtatccccaaagttcaacagcttctccaagacttcttc
aatggcaaagagctctgcaagagcattaaccccgacgaggctgtggcttatggagcggct
gttcagggtgctattctaagcggtgaagggaatgagaaggtgcaagaccttcttctgctg
gacgtgactcctctgtccctcggtctcgaaaccgccggtggagttatgacgaccttgatc
cagaggaacactaccatcccgaccaaaaaggaacaggtcttctccacttactctgacaac
cagcctggtgttttgatccaagtctacgaaggtgagagagccaggaccaaggacaacaac
ctcctcgggaagttcgagctctctggcatccctcctgctccacgtggtgttcctcagatc
actgtctgcttcgacattgacgcgaatggtatcctcaatgtctctgcggaggacaagacc
acggggcagaagaacaagatcaccatcaccaacgacaagggtcgcttgtctaaggacgag
atagagaagatggtgcaagaggctgagaagtacaagtctgaggatgaggagcacaagaag
aaggttgaagccaagaatgcgcttgagaactacgcttacaacatgaggaacacgatccgc
gatgacaagattggtgagaagcttcctgctgcggacaagaagaagattgaggattctgtt
gaggaggcgatccagtggctcgatgggaaccagacggctgaagctgacgagtttgaagac
aagatgaaggagctggagagcgtgtgcaatccgattattgctaagatgtatcaaggagct
ggtggtgaagcaggtggcccctctggtatggatgatgatgaagctcctccttctgccgga
ggtgctggccccaagattgaggaagtcgactaa
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