Brassica rapa (field mustard): 103860555
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Entry
103860555 CDS
T03449
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103860555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103860555
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
103860555
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WDR55
WD40_Gbeta
Beta-prop_TEP1_2nd
EIF3I
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_TEP1_C
Cytochrom_D1
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_NWD2_C
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Ge1_WD40
Beta-prop_EDC4L
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
103860555
NCBI-ProteinID:
XP_009136419
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Position
A03:22214204..22216847
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AA seq
430 aa
AA seq
DB search
MEISGSLEQALQEGNILRQLNALIVAHLRHHNLSQVASDVASATMTPLNVEVSPNRLLEL
VSKGLAAENNGSLRGVSSSVLLPTSYGSVANPRTASIDFSATHVKGSSKALPKHESKQLS
EHKSVVRCARFSSDGMFFATGGADTSIKLFEVPKVKQMLSGDTQARPLIRSFYDHAEPIN
DLDFHPRSTILVSSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSVSFHPSGEFLLAGTD
HAVPHLYDVNTYQCFLPSSFPDNGVNGGINQVRYSSTGSVYVTASKDGAIRLFDGVSAKC
VRSISSAHGKAEVTSAVFTRDQRFVLSSGKDSTVKLWEIASGRMVKEYIGAKRLKLRSQA
IFNDTEEFVISIDEGNNEVVTWDARTAEKVAKWPSNHNGVPRWIEHSPVEPVFVTCGTTD
RSVRFWKESV
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggagattagtggcagtttagagcaagctctgcaagagggaaacatcttgagacagctc
aatgccctcatcgtggctcatctccgtcaccacaatctctcacaggttgcaagtgatgtt
gcttcagcaaccatgacaccattgaatgttgaggtttctccaaaccgtcttctcgagctt
gtttcaaagggtcttgcagcggagaacaacgggtcactgagaggtgtttcttcatcagtc
ttgttacccacttcttatggatcagttgctaatcctcgcacagcttctattgacttcagt
gctactcatgtaaagggctcatcaaaggctctcccaaagcatgaatcaaagcagctatca
gagcacaagagcgtcgttaggtgtgcaagatttagttctgatggaatgtttttcgcaacc
ggcggtgcagacacatctattaagctctttgaggtgccaaaagtaaagcagatgctttca
ggagatactcaagctcgaccattaatacgtagtttttatgatcatgctgaaccaataaac
gatcttgatttccaccctcggagcacaatcctagtatccagtgctaaagacaactgtata
aagttcttcgacttctccaaaacgacagctaaacgagcatttaaagtttttcaggataca
cataacgtgcgctctgtatctttccatccttctggagagtttctgcttgcaggaactgat
catgcggttccacatctgtacgatgtaaacacttatcaatgcttccttccttcaagtttc
ccagacaatggagtaaatggagggattaatcaggtgcggtattcttcaactggatccgtc
tacgttacagcctcaaaggatggagctatacgactctttgatggggtaagcgcaaagtgt
gtgcgctccattagcagtgcacatggaaaagcagaggtcactagcgctgtgttcaccaga
gatcaaaggtttgttctctcgtctggtaaggattctacggttaagttatgggaaatagct
tctggtcggatggttaaggaatacatcggagcaaagaggttaaaactgcggtctcaggca
atctttaatgatacggaagagtttgtaatctccatagatgaaggaaacaatgaggtcgtt
acgtgggatgcgagaacagcagagaaagtggcaaagtggccttcaaaccataacggtgta
ccacggtggatcgagcactcaccggttgaaccagtctttgttacttgtggaacaacagat
agatcagttcggttctggaaggaatccgtgtag
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