Brassica rapa (field mustard): 103861505
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Entry
103861505 CDS
T03449
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103861505
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103861505
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103861505
NCBI-ProteinID:
XP_033144731
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Position
A03:complement(26898324..26900260)
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AA seq
406 aa
AA seq
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MQTKKLFISILSFLLYAPLIFSSPVPDPEAIVEEVHKSINASVAARRKLDYLSCTTGNPI
DDCWRCDPHWESHRHRLADCAIGFGKNAIGGRDGRIYVVTDSGNDDPVTPKPGTLRHAVV
QDEPLWIIFQRDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCVTIQYVTNIIIHGVHIH
DCKRGGNAMVRSSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCEDGLIDAIMGSTAI
TLSNNYMTHHDKVMLLGHSDTYARDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWEMYAIGGSANPTINSQGNRFVAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLLNG
AFFTPSGGAQSSSYAKASSLGAKPSSLVGPLTVGSGALNCRKGSRC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgaagaagctctttatctccatactctcctttcttctctatgctccacttatc
ttctcttcgccagttccggacccagaagccatcgtcgaagaagttcacaagagcattaac
gcatcggtcgcagcacggaggaagctagactacctctcctgcaccaccggcaacccaatc
gacgactgctggcgctgcgacccacactgggagtcccaccgccaccgcctcgccgactgc
gccatcgggttcggcaaaaacgccatcggcggccgcgacggtcgcatctacgtcgtcacc
gactcaggcaacgacgacccggtgacccccaagcccggaactttacgccacgccgtggtc
caggacgagcctctctggatcatcttccagcgagacatgaccatccgcctcaaagaggag
ctcatcatgaactctttcaaaaccatcgacggccgcggcgcctccgtgcacatcgccggc
gggccttgcgtcacgatccagtacgtgacgaacatcatcatccacggggttcacatccac
gactgcaagcgaggcgggaacgctatggtgcggagctcgccgaggcattacgggtggaga
acggtgtctgacggtgacggtgtgtcgatcttcggagggagtcatgtttgggttgatcac
tgctcgttgtctaactgtgaagatgggcttattgatgccataatgggctcgacggcgatt
actttgtctaataattacatgacgcatcatgataaggttatgttgcttgggcatagtgat
acttacgctcgtgacaagaacatgcagattactattgcttttaatcattttggtgaaggg
cttgttcaaagaatgccaaggtgtagacatgggtacttccatgtggtgaacaatgactat
acacattgggagatgtatgcgattggtggaagtgctaatcctactatcaatagtcaaggg
aacagatttgtggccccgaatattagattcagcaaagaggtgactaagcatgaggatgcg
ccggagagtgagtggaagaggtggaactggagatcatcaggtgatttgttgttaaacggt
gcgttttttactccgtccggtggtgctcagtcgtctagctatgctaaggcgtcgagtctt
ggggcgaaaccgtcttctcttgttggaccattgacggtgggttctggtgcactgaattgc
cgcaagggttctcgttgctga
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