Brassica rapa (field mustard): 103861569
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Entry
103861569 CDS
T03449
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103861569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103861569
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
103861569
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
103861569
NCBI-ProteinID:
XP_009137535
UniProt:
A0A397L9M7
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Position
A03:27235096..27237380
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AA seq
200 aa
AA seq
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MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHN
HPHILLLQIGNTFCKLPGGRLKPGESEVEGLKRKLTSKLGGNSAGIVPDWKVGECVATWW
RPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG
PVISTIPQQLSRFHFNMISS
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggctatgtctcaggtggtgaacacataccctctttcgaattacagcttcggaactaaa
gaaccgaagctggagaaggacacctccgtcgccgaccgactcgctcgtatgaaagtcaac
tatatgaaagagggcatgaggactagcgttgaagggattcttctggtgcaagaacacaac
catcctcatatacttctcctgcaaatcggtaacacattctgcaaacttccaggtggacgc
ctgaagcctggagaaagtgaagtcgaaggtctgaagagaaagttgactagtaagcttgga
ggcaattcggctggtattgtacctgactggaaggtaggagaatgtgttgcgacatggtgg
cgtccaaactttgaaaccatgatgtacccgtattgccctcctcacatcacgaaaccaaag
gaatgcaagagactctacattgttcacttatctgagaaagagtacttcgcagtgcccaaa
aacttgaaactcttggccgtccctttgtttgaactctatgacaatgttcagagatatgga
ccggttatatcgaccattcctcaacagctatccagattccatttcaacatgattagttcg
tga
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