Brassica rapa (field mustard): 103862557
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Entry
103862557 CDS
T03449
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103862557
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103862557
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103862557
NCBI-ProteinID:
XP_009138507
UniProt:
M4DBH3
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Position
A01:complement(8243618..8245616)
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AA seq
406 aa
AA seq
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MQTKKLFISIVSFLLYSPLMFSSPVPDPEAIVEEVHKSINASVAARRKLGYLSCSTGNPI
DDCWRCDSNWEKNRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDDPVTPKPGTLRHAVI
QDEPLWIIFQRDMTIHLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIH
DCKPGGNAMVRSSPRHFGWRTISDGDGVSIFGGSHVWVDHCSLSNCDDGLIDAIMGSTAI
TLSNNYMTHHDKVMLLGHSDTYTRDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWEMYAIGGSANPTINSQGNRFVAPNIRFSKEVTKHEDAPESEWKSWNWRSSGDLLLNG
AFFTPSGGASSSSYAKASSLGARPSSLVGPLTLGSGALNCRKGSRC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgaagaagctctttatctccatagtctctttccttctctattctccattgatg
ttctcttcaccagttccagacccagaagctatcgtcgaagaagttcacaagagcattaat
gcgtcggttgcagcgagaaggaagctaggctacctctcatgtagcaccggtaaccctatc
gacgactgttggcgatgcgactcaaactgggagaaaaaccgccaacgtctcgccgactgc
gccatcgggttcggcaagaacgccatcggcggccgtgacggtcgtatctacgtggtgacc
gactcaggaaacgacgacccagtgacccccaagcccggaacgttaagacacgccgtgatt
caagacgaacccttatggatcatcttccagcgagacatgaccattcatctcaaagaagag
ctcatcatgaactctttcaagaccatagacggtcgtggcgcgtctgtacatatagctggt
gggccatgtatcacgatccagtacgtgaccaacattatcattcacgggattcatatacat
gactgcaagccaggtgggaacgctatggtgcgaagctccccacggcatttcgggtggaga
acaatatcggacggtgacggtgtgtctattttcggggggagtcatgtttgggttgaccat
tgttcgttgtctaactgtgacgacgggcttattgatgctataatgggctcgacggctatt
actttgtctaacaattacatgacgcatcatgataaggtcatgttgcttggtcatagtgat
acttacactcgtgacaagaatatgcaaatcaccattgcttttaaccattttggtgaaggt
cttgttcaaagaatgccaaggtgtagacatgggtacttccatgtggtgaacaatgactac
acacattgggagatgtatgcgattggtggaagtgctaatcctactatcaatagtcaaggg
aacagatttgtggccccgaatattagattcagcaaagaagtgacgaagcacgaggacgcg
ccggagagcgagtggaagagctggaactggagatcatctggtgatttgttgctaaacggt
gcgttttttacgccttccggtggtgcttcctcttctagctatgccaaggcttcgagtctt
ggggctcgaccgtcttctctcgttggcccgttgacgttgggttctggtgcgctgaattgc
cgcaagggttcacgttgctga
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