Brassica rapa (field mustard): 103862757
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Entry
103862757 CDS
T03449
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
103862757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
brp04121
]
103862757
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
103862757
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
103862757
NCBI-ProteinID:
XP_009138698
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Position
A04:343317..346393
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AA seq
592 aa
AA seq
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MYKRVSLSFPEEVLEHVFSFIHLDKDRNSVSLVCKSWYEIERWCRRKVFVGNCYAVSPGT
VIRRFPKLRSVELKGKPHFADFNLVPEGWGGYVYPWIEAMSTSYTWLEEIRLKRMVVSDE
CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAASCRNLRELDLRESDVDDVSGHWLSHFP
DTYTSLVSLNISCLSSELSFSALERLVTRCPSLKSLKLNRAVPLEKLAILLQRAPQLEEF
GTGGYTADVRPDVFSDLSVALSGCKKLKCLSGFWDAAPAYLPAVYSVCCRVTTLNLSYAT
VQSYDLVKLLSQCPKLQRLWVLDYIEDTGLEVLASTCKDLRELRVFPSDPFVMEANVALT
EQGLVSVSMGCPKLESVLYFCRQMTNDALVTIARNRPNMTRFRLCIIEPKAPDHMTLEPL
DVGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGESDLGMHHVLSGC
DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE
RGPPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQQHSTMRVCQGNGHY
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtataagcgagtgtcgttatcgtttccagaagaagtcctcgagcacgtattctcgttt
atacacctggacaaggacaggaactcggtgtccctggtgtgcaagtcgtggtacgagatc
gagcggtggtgcaggaggaaagtcttcgtcgggaactgctacgcggtgagccccgggacg
gtgataaggaggttcccgaagctgagatccgtggagctgaaggggaagccgcacttcgcg
gacttcaatttggtgccggaggggtggggagggtacgtgtacccgtggatagaggcgatg
tcgacgtcgtacacgtggctggaggagataaggctgaagaggatggtggtgagcgacgag
tgcttggagctcatcgctaagtcctttaagaattttaaggttctcgtgctttcttcctgc
gaaggcttctccaccgatggcctcgctgctatcgccgcctcttgcaggaatctgagagag
cttgatttgcgtgagagtgatgttgacgatgttagcggccactggcttagccatttccca
gacacatacacttctttggtatcgctcaatatctcttgcttatcctctgagctcagtttc
tctgctctcgaaaggctggtgactaggtgtccctctctcaagtctctcaagcttaaccga
gctgttcctctcgagaaactggctattttacttcaaagagcgcctcagcttgaggaattt
ggcaccggtggctacactgctgatgtgcgtccagatgtgttctctgatttgtctgtggct
ctctctggctgcaagaagttgaagtgcttatctgggttttgggatgctgctcctgcctat
cttccagctgtttattccgtttgctgtcgggttactactttgaacctgagttatgcgacg
gttcagagttatgatcttgtcaagcttcttagccaatgtcctaaattgcagcgtctctgg
gtgttggattacatcgaggatactggtcttgaagtgcttgcttcaacctgcaaggacctc
cgcgagctgagagtgtttccgtctgacccttttgtcatggaggcaaacgttgcattgacg
gaacaagggcttgtctcggtctctatgggctgtccaaaactcgagtcggttctctacttc
tgccgtcaaatgaccaatgatgcgttggtaaccattgctaggaaccgtcccaacatgacc
cgcttccgtttgtgcatcatcgagccgaaagcccccgaccatatgactctagagccactg
gatgtgggatttggagccatagtagagcactgcaaagatctccggcggctctccctatcg
gggttgttgaccgacaaggttttcgaatacattgggacatatgcaaagaagatggagatg
ctgtcagtggcgtttgcaggagagagtgacttggggatgcatcatgtgttgtcagggtgc
gatagtttgaggaagctagagataagggactgcccgtttggagacaaggcgctattggcc
aatgcttcgaagctggagacaatgcgatctctttggatgtcttcttgctcggtgagtttt
ggagcctgcaagttattaggacagaagatgccaaagctcaatgtggaagtcatcgatgaa
aggggtccgccggactcgagaccggagagctgccctgttgagagagtgttcatataccga
acagtggcgggtcctcggtttgacatgcctggcttcgtctggaacatggaccaacaacac
tcaaccatgagggtttgccagggaaatggtcactactaa
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