Brassica rapa (field mustard): 103862922
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Entry
103862922 CDS
T03449
Name
(RefSeq) cysteine protease ATG4b isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
103862922
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
brp01002
]
103862922
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
brp04131
]
103862922
03029 Mitochondrial biogenesis [BR:
brp03029
]
103862922
Peptidases and inhibitors [BR:
brp01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
103862922
Membrane trafficking [BR:
brp04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
103862922
Mitochondrial biogenesis [BR:
brp03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
103862922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
103862922
NCBI-ProteinID:
XP_009138889
UniProt:
M4DDF4
LinkDB
All DBs
Position
A04:1342200..1345351
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AA seq
419 aa
AA seq
DB search
MKAMCDSFLPSKCSSSSTADEKRDKSTLNGWTVIVNTATSMASGAIRRFQDRVLGPSRTG
IPSTTSEIWLLGVCYKISEAESLGEADAFRQDFSSLILITYRRGFEPIGETTYTSDVGWG
CMLRSGQMLFAQALLFQRLGRSWRKKESEPSEEEYLEILELFGDSEASAFSIHSLILAGE
SYGLAAGSWVGPYAVCRSWESLARKKREETGVAMAVHIVSGSEDGERGGAPILCIEDVAK
ACLEYSEGETEWTSVLLLVPLVLGLDKVNPRYIPSLIATFSFPQSLGILGGKPGASTYIV
GVQEDKGFYLDPHDVQQVVTVNKETKDVDTSSYHCNTLRYVPLESLDPSLALGFYCRDKD
DFDDFCVRATKLAGDANGAPLFTVTQSHRGGERGIAETSSVASSTEISGEDHEDDWQLL
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaaggctatgtgtgatagctttcttccttcaaaatgttcttcatcatcaaccgcagat
gagaaacgtgataaatccacacttaatggttggacagtaattgtaaacacagctacttct
atggctagtggcgcgattaggaggtttcaagatcgtgttttagggccgagtaggaccggc
attcccagcactacaagtgagatatggctactgggtgtctgttataaaatctcagaagct
gaatctttaggagaagcagatgcattcagacaagacttttcgtccttgatattaataaca
tatcgtagaggttttgagcctattggagagacaacgtatactagtgatgttggatggggt
tgtatgcttcgaagcggacaaatgctctttgcgcaggcattgctatttcaaaggctggga
aggtcttggaggaaaaaggaatctgagccgtctgaagaggaatacttagagatcttggaa
ctttttggtgattctgaggcttcggcgttctccattcacagtcttatactagccggagaa
tcatatggcttggctgctgggtcatgggttggaccatatgctgtttgtcgatcatgggaa
tcattagctcggaagaaaagagaagaaactggtgttgccatggctgttcatatcgtttct
ggcagcgaagatggggagagaggtggagctccaattctctgtatagaagatgttgctaaa
gcttgtttggagtattcagaaggagaaactgagtggacttcagttcttctcttggtccca
cttgttcttggacttgacaaagtgaacccaaggtacattccatctctgatagccactttc
agtttccctcaaagcctggggattttgggtggcaagccaggtgcatcgacttacatagtt
ggagttcaagaagacaaaggtttctaccttgatccacacgatgttcaacaggtagtgaca
gtgaacaaagaaactaaagatgttgacacatcgtcttaccattgcaatacacttcgttat
gttccgttggaatcactagacccgtcgctcgctcttggattctattgccgggacaaagat
gattttgatgatttctgtgtacgagcaacgaagctagcaggagacgccaacggcgctcca
ttgttcacggtgactcaatctcacagaggtggtgagcgtgggattgcagaaaccagctct
gtggcatcatctacagagatatctggtgaggatcatgaagatgactggcaattactttga
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