Brassica rapa (field mustard): 103862977
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Entry
103862977 CDS
T03449
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 2
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103862977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103862977
Enzymes [BR:
brp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103862977
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103862977
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103862977
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
FTP
Motif
Other DBs
NCBI-GeneID:
103862977
NCBI-ProteinID:
XP_009138955
UniProt:
M4DDJ8
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Position
A04:1647993..1652324
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AA seq
600 aa
AA seq
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MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKTAATDDVPESAPLDGFFLRYRWYRVQSDK
KVTICSVHPTEQATLQCVFCSKRRALVAKSYHCSPKCFTDAWQHHKTLHERAAAENGNEE
DELTRFNSTGSGVLASTLSGSMSNLTLANNGPTPFYPSSITQKNGGETLIEVGGCKTYTP
TADDIGYVLKFECVVANAETKQFVGHPSTILTSRVIPAPSPSPRRLIPVNGADVMGHLDQ
DGRIQSAGSFTVLSYNILSDTSASSDLYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQ
EVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSVIDGCATFFRRDRFSHVKKYDVE
FNKAAQSLTEAIIPHTQKRTALNRLVKDNIALIVVLEAKFGNQPTDPSGKRQLICVANTH
VNVQQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTLPGSAPHTLLVMGKVDPLH
PDLMVDPLNILRPHTKLTHQLPLVSAYTSFVRSVMGLGLEQHRRRMDLNTNEPLFTNCTR
EFIGTHDYIFYTADTLMVESLLELLDEDGLRKDTALPSPEWSSNHIALLAEFRCMPRTRR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgctaagcgtgatccgagtgcatctcccttccgagattcctattgtgggctgtgagtta
actccttacgtccttgttcgccgccctgataagaccgccgccactgatgatgtccctgag
tcagctcctctcgatggcttcttcttgagatacagatggtatcgtgtacagagcgataag
aaagtaaccatttgcagcgtgcatccaacagaacaagccaccttacaatgtgtattctgc
tcaaagcgtagagccctcgtcgcaaaaagctaccactgctctcctaaatgcttcacagac
gcgtggcagcaccacaagactttacacgagcgagcagctgcagagaacggaaacgaggaa
gatgagctaactcggttcaacagcacaggctccggagttctcgccagcaccttatccggc
tcaatgtcgaatctcaccctcgccaacaacggccccacgccgttttacccttcaagcatc
actcagaagaacggaggagagacgctaatcgaggtcgggggttgcaaaacgtacacgcca
accgctgacgacattggctacgtgttgaagtttgagtgtgtcgtggctaatgcagagact
aaacagtttgtggggcatcctagtaccattttgacatcgcgtgtgattcctgcgccttct
ccgagtcctcgtaggcttatccctgttaatggagctgatgtgatgggtcatttggatcaa
gatggtcggattcagagtgcgggatcgttcactgttctttcttataatattttgtctgat
acttctgcaagtagcgacctttacagttactgtcctccttgggctctttcttggccgtac
agaagacagaatctgttgagggagattgttggttatcgtgctgatgtagtttgcctacaa
gaggtacaaagtgatcatttccatgagattttcgcaccggagttggataaacatgggtat
caagctctctacaagagaaagactaatgaggttctcagtggaagtacgagtgtaattgac
ggatgtgcaacgtttttcagacgggatagattttcacatgtcaagaaatatgatgttgag
ttcaataaggctgctcagtctttgactgaggctataatccctcatacgcagaagagaact
gctttaaaccggcttgtgaaggataacattgcgttgatagttgttcttgaagcgaagttt
ggtaatcaacctactgatccttcagggaagcgccagcttatctgtgtggcaaacacacat
gttaatgttcaacaagagctgaaggacgtgaagctctggcaggttcatactttattaaag
gggctagagaaaatagctgctagtgctgatattcctatgcttgtatgtggagacttcaat
acacttcccggaagtgctcctcatacacttcttgtaatggggaaagttgatccactgcat
ccagacttaatggttgatccccttaatatcctgcgtcctcatactaaactgactcatcag
ctacctttggtgagcgcttacacatcatttgtgagatcagtaatgggacttggattggaa
cagcacagaaggagaatggatcttaatacaaacgagcctttgtttactaattgtacaagg
gagttcattggcactcatgactatatattttatacagcggatactttgatggtggaatct
ttattggagttgctggacgaagatggattgagaaaggatacagctcttccttcacctgaa
tggtcttctaatcacattgcactcttggcggagtttcgatgcatgcctagaaccagacgc
taa
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