Brassica rapa (field mustard): 103863368
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Entry
103863368 CDS
T03449
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 36a isoform X1
KO
K14563
rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103863368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
brp03009
]
103863368
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Sno RNPs
Box C/D snoRNPs
103863368
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fibrillarin
GCD14
Methyltr_RsmB-F
PCMT
Motif
Other DBs
NCBI-GeneID:
103863368
NCBI-ProteinID:
XP_009139370
UniProt:
M4DBP5
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All DBs
Position
A01:8680987..8683403
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AA seq
310 aa
AA seq
DB search
MRPPLTGGRGGGGFSGGRGGGGFSGGRSGGRGRGFGDRGGGRSGRGMRGRGERGRNGRGA
PGRGGMKGGSKVIVEPHRHPGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTE
YRVWNPFRSKLAAAILGGVDNIYIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFS
HRSGRDLVNMAKKRTNIIPIIEDARHPAKYRMLVGMVDVVFADVAQPDQARIVALNSSFF
LKTGGHFNISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGTY
RAPKKTKVAA
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgagacctcctctaactggtggacgtggtggtggtggcttcagtggcggacgtggtggc
ggtgggttcagtggtggacgttctggaggaagaggaagaggattcggagaccgtggcggt
ggtcgcagcggcagaggcatgagaggtagaggagagcgtggtcgcaacggtagaggagca
ccaggacgtggtggaatgaagggaggtagcaaggtgattgtggagccacacagacaccca
ggagtgttcattgccaagggtaaagaggatgctcttgtcactaagaacttggttcctggt
gaggctgtttacaacgagaagagaatctctgttcagaatgaggatggaaccaagactgaa
tacagggtgtggaatcctttccgttcaaagttggctgctgctattctcggtggtgttgat
aacatttacatcaaacctggttctaaagttctataccttggtgctgcttctgggacaaca
gtctctcacgtgtctgacattgttggacctgagggatgtgtttacgctgttgagttctct
caccgaagtggtagagatttggtgaacatggcgaagaagagaactaatattattccaatc
attgaggatgctagacatcctgctaaatacagaatgcttgtcggcatggttgatgttgtc
ttcgctgatgttgctcagcctgatcaggctaggatcgtggctttgaactcaagcttcttc
ctcaaaacaggaggtcactttaatatctcgatcaaggcaaactgtattgactcaacggtt
ccggcagaagcagtgtttcagagtgaagtgaagaagttgcagcaggagcaattcaagcca
gcagagcaagtgacgcttgagccatttgagcgtgatcatgcctgtgtcgtcggtacctac
cgtgcacctaagaagaccaaggttgccgcttag
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