Brassica rapa (field mustard): 103864810
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Entry
103864810 CDS
T03449
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
brp04131
]
103864810
Membrane trafficking [BR:
brp04131
]
Protein recycling
Others
EARP complex
103864810
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
103864810
NCBI-ProteinID:
XP_009140832
LinkDB
All DBs
Position
A04:15033132..15040955
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AA seq
1079 aa
AA seq
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MDFSKVGEKFLSSVKSAKSLGLLPSSSSFSDRPEIPARATAAAAVARALAGLHPDQRLSI
SSAATELSSIYGNSHRPLPQEVEELEQGFYQEDFDPVRHILENVPDDQSELAFFEKQATL
RLVQLDRVAEDLSHHVMEHHEVMVKGMNLVRELEKDLKIANVICKNGRRNLTSSMNEASR
DLIVHTHSKKKQALLDMLPILTDLRHARVMQSSLEDLVDEGNYCKAFQVLSEYLQLLDSL
SEFSAIQEMTRGVEVWLGRTLHKLDSLLLGVCQEFKEDSYVMVLDAYALIGDVSGLAEKI
QSFFMQEVISETHSVLKTVVGEDNTAATQFSRLTYSDLCLQTPESKFRQCLLRTLAVLFQ
LIYSYHEIMSFAPEKKVESYSSTSFASTPRIDSVSDTSCDPQDGGLSSSMSSAGVPNISA
EETSERETSIPVKQASNNAIDDSRDFGETESSGESPWYYLRKESAALVSETLQRGRRNLW
QLTTSRVSVLLSSPTASSTSMHQFLKNYEDLSVFILAGEAFCGFEVLDFREKLKGVCENY
FTAFHRQSVHALKMVLEKETWTKLPPGTVQAINFAGLVGDGAPLIMSSRNATGSSRFAHS
SKSNDSIDPSGNRSGFSYWLKSGNPFSAKLNYYREDQDYSSVNGAASGDSEGNDSIHEDV
VNPKIRDAKRINGGSPVSGDENEDLHADYIDEDSQLPRRSFTRSVSRSASSHISTNDDLT
AQTGSSLCLLRSMDKYARLMQKLEIVNVEFFKGICQSFGVFFYFVYQVFGQENTNSGGKG
GADSSNHRLKSCLSRISQECEQWIKPQLSSSPSSSLSFPNTVPSLADVTPASPIKTSGHV
SGTSFSLKERCAAVDTVSLVSRILHKSKAHLQSMLMSRNGSLVEDFFGQLVGSVPDLTEH
LHRTTARILLHVNGYVDRIANSKWEVKELGVEHNGYVDLMLGEFKHYKTRLAHGGISQEV
QNLLLQYGVEIFAEMLVEGFSRIKRCTDEGRALMSLDIQVLINGLQHFVPTKVKPKLQIV
ETFIKAYYLPETEYVHWARAHPEYTKAQVIGLVNLVATMKSWKRKTRLEVVDKIESAAA
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atggatttctccaaagtcggcgaaaagttcctcagctctgtcaagtccgctaaatccctc
ggactcctaccctcttcttcctccttctctgatcgccctgagattccggcacgtgctacg
gccgcagctgctgttgctcgtgctctggctggacttcatcctgatcagagactgagtata
tcgtctgctgctactgagcttagctctatatatggtaacagtcacagacctcttcctcaa
gaagttgaggagcttgagcaaggcttctatcaagaggactttgatccagtaaggcatatt
ctggagaatgtgccagatgatcaaagtgaacttgctttttttgagaagcaggccaccctg
aggttggtgcagctagatagagtggcggaagatctgtctcatcatgttatggagcatcat
gaagtaatggtgaaggggatgaatttggttagagagttggagaaagatttgaagattgct
aatgtcatctgcaagaatggaagacggaatttgacttcttccatgaatgaggcttcaaga
gatcttattgtacacacccattccaagaagaaacaagctcttctggatatgcttcctata
ttaaccgatcttcgccatgcaagagtaatgcagtcaagtcttgaagaccttgttgacgaa
ggaaactattgcaaggcatttcaagttttatctgagtacttgcagcttcttgacagtcta
tctgagttttcagcaatccaagagatgacccgtggtgttgaggtttggttaggaagaact
cttcataagctggattcacttttgttgggcgtttgccaagagttcaaagaagatagttat
gtaatggtccttgacgcttacgcactgatcggtgatgtctctggtctcgccgagaagata
cagagcttctttatgcaagaagttatctcagaaacacactcagtcctaaagaccgttgtt
ggggaggataacactgctgccacccaatttagtagacttacatacagcgatctatgtctt
cagacaccagaatccaagtttaggcaatgtcttttgagaacactagctgtgctatttcag
ttaatatattcgtaccatgagataatgagtttcgctccagaaaagaaggttgaaagctat
agctcaacaagttttgcatcaactccaaggattgattcagtttcagatacttcttgcgac
ccacaggatggtggtctctcttcatccatgagttcagcaggcgtacccaacatttctgct
gaagagactagtgaaagagaaacctccattcccgtaaagcaagcgtctaataatgcaata
gacgactctagggattttggagaaacagaatctagtggcgagtcaccatggtactatcta
cgaaaagagagtgctgctcttgtttcagaaactctgcaaagaggacgcagaaatctctgg
caacttacaacaagccgtgtgtcagttttgctctcgtccccaactgcttcttcaacaagt
atgcatcagttcctaaaaaactatgaagacctgagcgtctttatccttgctggggaagcg
ttctgtggttttgaagttcttgattttagggagaagctgaagggtgtatgcgaaaactat
tttactgcatttcataggcaaagcgtgcatgcgctcaaaatggtcctggagaaggagacg
tggacgaaactgccacctggtactgtgcaagctattaattttgccggtcttgtgggggat
ggggctcccctaattatgtcttcccgaaatgccactggttcttccagattcgctcactcg
agtaagtcaaatgactcgattgatcctagtgggaacaggagtggattctcatattggttg
aaaagtggaaaccctttctcagcaaagttaaattactatagagaagaccaagactactcc
tctgtcaatggagctgcctctggagattctgaagggaatgatagtattcacgaggatgtt
gtaaatcctaagataagagatgcaaaacgcattaacggaggtagtcccgtttcaggagat
gaaaacgaagaccttcatgccgactatattgacgaggatagtcagcttccaagacggagc
tttacacgtagtgtatcaaggagtgcttcttcacatatcagtactaatgatgatttgacg
gctcaaacaggatcctcgctttgtcttctaaggtcgatggataagtacgcgaggcttatg
cagaaactagaaattgttaatgtggaattctttaagggaatatgccaatcgtttggggtc
tttttctatttcgtgtatcaagtatttggtcaagaaaatacgaattcaggtggaaaagga
ggtgccgactcttccaaccatcgtttgaaaagctgcttatcccggatatcacaagagtgt
gagcaatggataaagcctcaattgtcatcatcaccatcttcttcactttccttccccaac
acagtccctagtcttgcggatgtgactccagcgagtcccataaaaacatctggtcacgta
tcaggcacatcttttagtctcaaggaaagatgtgctgcagtggacactgtttctcttgtg
tctcgaatactgcataaatcaaaagctcatctccagtctatgcttatgtcaagaaatggc
tctctggttgaagacttctttggtcaactggttggttccgtacctgatctgacagagcat
ttacataggacaactgcaaggatactgctgcatgttaatggatatgtcgaccggattgct
aattctaaatgggaagtcaaggagcttggtgtggagcataatgggtatgttgatttgatg
ctcggggaattcaaacactacaaaacaaggcttgctcatggaggcatttcacaggaggtc
caaaacctccttctgcaatatggagttgaaatatttgcagagatgctggtcgaagggttc
tctcgaataaagagatgtactgatgaaggacgtgctctcatgtcattagatattcaggtc
ctaataaacgggctacagcactttgtgccaacaaaggtgaagccaaagttacagatagtc
gaaacatttatcaaggcatactatctgccagagacggaatatgtccactgggcaagagct
catccggaatatacgaaagcacaggtcattggacttgtgaatttagtagccaccatgaaa
agctggaagaggaaaacgcgtctagaagttgtggataagattgaatcagctgctgcatag
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