Brassica rapa (field mustard): 103864977
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Entry
103864977 CDS
T03449
Name
(RefSeq) zinc finger CCCH domain-containing protein 25 isoform X1
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103864977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103864977
Spliceosome [BR:
brp03041
]
Complex B
Other components
Prp19-related factors
103864977
Complex C
103864977
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_3
zf-CCCH_4
RRM_3
RRM_occluded
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
103864977
NCBI-ProteinID:
XP_009141010
UniProt:
M4FFW4
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All DBs
Position
A04:15872677..15875304
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AA seq
453 aa
AA seq
DB search
MAHRILRDHDADGWERADFPIICESCLGDNPYVRMTKSDYDKECKICTRPFTVFRWRPGR
DARYKKTEVCQTCCKLKNVCQVCLLDLEYGLPVQARDTALNISTHDSIPKSDVNREFFAE
EHDRKTRAGLDYESSFGKIRPNDTIRMLQRTTPYYKRNRAHICSFFIRGECTRGEECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMGTLETPDDQSIKTLYVGGLNSRVL
EQDIRDQFYAYGEIEPIRILAEKACAFVTYTTREGAEKAAEELSNKLVVNGQRLKISWGR
PQAPRTDPDGGGSQQQPPPMQQYYMHPPPPQPHQDRPFYPSMDPQRMGAVTSSQDSGDNR
MPPHGHYQQHQPYPPQPYGGYMQQPYQQYPPYHHGPPQAPHPYPQQQQQPGPGSRPNPPP
SSVSAPPPDSVSDGPSGSSSQQSAEAAVTLTSQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatagaatactcagagatcacgacgctgatgggtgggaacgcgctgacttcccc
atcatctgcgagtcttgtctaggcgacaatccttatgtccgaatgacaaaatctgattac
gacaaagagtgcaagatctgcacccgaccgttcaccgtattcaggtggcgccccggccgc
gacgcaaggtacaagaaaaccgaagtttgtcagacatgctgcaagctcaagaacgtgtgc
caagtctgtctcctggatcttgagtatggtcttcccgttcaggccagagacacggctctc
aacattagtactcatgattccatccccaaaagcgatgtcaacagagagttctttgccgaa
gagcatgatcgaaagacgagagctggattagattatgagtcttcgtttgggaagattcgt
cctaatgatactattcgtatgcttcaaagaacgacgccgtattacaagaggaaccgagcg
catatttgtagtttcttcattaggggagagtgtactagaggtgaagaatgtccttaccgt
cacgagatgcctgagacaggagagttatcccagcagaacatcaaagaccgttactatggt
gtgaacgatccagtagcgttgaagttacttgggaaggctggtgagatgggcacattggaa
actccagatgatcaaagcatcaagacgctttacgtcggcgggctaaactctcgagtcctc
gagcaggacatacgagatcagttctacgcatacggagagatcgagcccatcagaatcttg
gccgagaaagcgtgtgctttcgtcacgtacacgaccagagaaggagcggaaaaagctgct
gaagagctaagtaacaagctagttgtcaacggccagaggcttaaaatctcttggggaaga
cctcaagctcccagaaccgatcctgatggcggcggctcgcagcaacaacctccaccgatg
cagcagtactatatgcacccgccaccaccacaacctcatcaggacagacccttttaccca
tcgatggaccctcagagaatgggtgcagtcacttcgtctcaagacagtggtgataacaga
atgcctccacatgggcattatcagcagcaccagccgtaccctccacagccgtatggaggg
tatatgcaacagccttaccagcagtatcctccttaccaccatggtccaccacaagctcct
catccttatccgcaacagcaacaacaaccgggtcctggttcaaggcctaaccctcctcca
agttcagtctctgctccgccacctgactctgtgtctgatggaccatcagggtcctcttct
cagcaatctgctgaggctgctgttactcttacgtcccagtag
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