Brassica rapa (field mustard): 103865072
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Entry
103865072 CDS
T03449
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103865072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103865072
03012 Translation factors [BR:
brp03012
]
103865072
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103865072
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103865072
Translation factors [BR:
brp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103865072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
R3H
HA2_C
AAA_22
HA2_N
Ank_5
Ank_2
nSTAND3
AAA_19
NPHP3_N
ATPase
AAA_7
AAA_11
Sigma54_activat
T2SSE
Rad17
Motif
Other DBs
NCBI-GeneID:
103865072
NCBI-ProteinID:
XP_009141099
UniProt:
M4DYR9
LinkDB
All DBs
Position
A04:complement(16365560..16371655)
Genome browser
AA seq
1305 aa
AA seq
DB search
MGNKRFRSENAAGKPSSVEATRIWASKVIEDFRASGNEVYTFEHNLSNTERGVIHQMCRK
MGIQSKSSGQGNQRRLSIFKDMYRNGKNKGAKEKSNKEKLRCVSFPPEADAILQELFTYY
PPCDGDTAATSFNKYVGKSGKQGQWKDDFFRKPQMSGDEILDKVASLSSRLRNDRALQEI
SKLRSRLPITSFRDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSSKRETCKIVC
TQPRRISAMSVSERISCERGESIGDNIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGKGS
GSYVSDITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFGGC
PVVRVPGFTYPVRTLYLEDVLSILKSGGDNHLSSANLSIPDQKLDLTDEDKLALDEAIIL
AWTNDEFDALLDLVSSQGSPEIYNYQHQSTLLTPLMVFAGKGRISDVCMLLSFGADWNLK
SKDGMTALELAETENQLEAAQIIREHAESSQSNSQQGQQLLDKYMATINPEQVDVSLIQQ
LMRKICGDSEDGGAILVFLPGWDDINKTRQRLLDSPIFSDGSKFNIICLHSMVPAGEQKK
VFSRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYSNVSTLQSSWVSKAN
AKQREGRAGRCQPGICYHLYSRLRAASMPDFKVPEIKRMPVEELCLQVKILDPNCKTNDF
LQKLLDPPVDQSIANALSILQDIGALTPEEELTELGEKFGHLPVHPLISKMLFFAVLVNC
LDPALTLACAADYKEPFTMPMSPVERQKAATAKLELASLCGGDSDHLAVVAAFDCWKNAK
ERGLAAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPNDISSCSQNSRDPGILRAVL
AVGLYPMVGRLCPSFGNNRRSLVETASGAKVRVHSLSNNFNLSSKKYDESLVVFDEITRG
DGGMHIRNCTVARDLPLLLVSTEIAVAPTERSDADDSDGEEEEEEDEETGEEEDEEEGMN
IHKAESRREENMMSSPENSVKLVVDRWLPFKTTALEVAQMYILRERLTASILFKVRHPRE
NLPPHLGASMYAIARILSYDGHAGLSSPSESMRPKHSRTEMYETGGWEEKPNSFLNSLFW
SLSLKESKPSSSGHVNRNRQHGFNTVPTEVASMHTQQNIKQRNPKSAINGDPGKKKEKMY
VNHTNGIHQPEAASIAKQSKHRSGNGSGSGNKKENMPSDQVYGNQQPNSAPREGASPVAN
HQISKKTKNRPANISDFGKKKTQYVPKIDLHKKEREDKVEQRGNA
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atggggaacaagaggttcaggtctgaaaatgcagccggcaagccaagttccgtcgaagct
actaggatctgggcttctaaggtcatcgaagactttcgagcctccggtaacgaagtttac
acgtttgagcataacctttcgaacaccgaacgtggcgtgattcaccagatgtgtcggaaa
atgggtattcaatccaaaagctctgggcaagggaatcaaaggcgtctttcgatattcaaa
gacatgtatagaaatgggaagaacaaaggagctaaggagaagtctaacaaagagaagctt
cggtgcgtctcgtttccgcctgaggctgatgctattcttcaggagttgtttacttattat
ccaccttgcgatggagatactgctgcgacgtcgtttaacaagtacgtaggcaagtctggt
aaacaagggcagtggaaagatgatttttttaggaagccgcagatgagcggtgatgagatc
ttggacaaggtggcgtctttgagttctaggctgaggaatgatagagctcttcaggagatc
tctaagttgcggtcaaggcttcccatcacatcgtttagagacgctatcacatctgctgtt
gaatctaatcaggttattcttatttctggtgaaactggttgcgggaaaactactcaggtg
cctcaatatcttttagaccatatgtggtcaagcaaaagagaaacctgcaaaattgtatgc
acccaaccacggcgtatctccgctatgtcagtttctgaaagaatatcctgtgaaagaggt
gaaagcattggagacaacattggttacaaggttcgactgcagagcaaaggtggaagacac
tcatcagttgttttctgcaccaatggcattctcctgagagtgcttgtaggaaaaggctct
ggcagctatgtttccgacattactcacatcattgtggatgaaatccatgaaagggattgc
tactctgatttcatgttggcaattataagggacttgcttccatcaaatcctcatctccgt
ctgatcttaatgagtgctacgcttgatgctgagagattttcgggatattttggaggttgc
ccggttgtccgtgtccctggattcacttatccagtgagaactttatatttggaggatgtg
ctctctattttgaagtcaggtggagataatcatctaagctctgccaacttgagtatacca
gaccagaagcttgatttaacagatgaagataaacttgctttagatgaagcaatcatcttg
gcttggacaaatgatgagttcgatgccctcttagatctagtttcttctcagggaagtccc
gagatctacaattatcagcaccaatcaaccttactaacaccacttatggtatttgctgga
aaaggaaggatcagcgatgtatgcatgctcctctcattcggcgcagactggaacttaaag
tccaaagatggaatgacagccttagaattggccgaaacagagaatcagctagaagctgct
caaatcatcagggagcatgcagaaagctctcagtctaattctcagcaaggacagcagtta
ctcgataagtacatggcgacaatcaacccggagcaggtcgatgtgagtcttatacagcag
ctaatgaggaagatatgtggcgactcagaagatggtggtgccattctcgtttttctacct
ggatgggatgatataaataaaacaagacagaggttacttgacagccctattttctcggat
ggtagtaaattcaacattatatgtcttcactcaatggttccagcaggggagcagaagaaa
gtttttagtcgccctcctcgaggttgtcgcaagattgtgcttgccacgaatattgctgag
tcagcagtgaccattgatgatgtggtttacgtgatagatagcggccggatgaaggaaaag
agctatgatccttacagtaatgtttcaactcttcaatcttcatgggtgtcgaaagcaaat
gccaaacagcgtgagggtcgtgcaggccgttgccagcctggcatttgttatcatctctat
tctagacttcgtgcagcctctatgccggattttaaagttcctgagattaagaggatgcct
gtagaagaactctgcctacaggttaagatcctcgatccaaattgtaagacaaatgatttc
cttcagaaactgttggacccgcctgttgatcaaagtattgcaaacgccttgagcatccta
caagacatcggagccctgacacctgaggaagagctgacagaacttggagagaagtttggt
catctcccagttcatcctctgataagcaaaatgcttttcttcgctgtattagtaaactgt
ctggatccagcacttactctggcatgtgcagcagactacaaggaaccgtttaccatgccc
atgtcgccagttgaaagacagaaagctgctactgcaaagcttgaacttgcgtcgctctgt
ggtggcgacagtgatcacctagcggttgttgccgcctttgactgctggaaaaacgcaaaa
gaaagaggtcttgcggctgagttttgctctcagtattttgtatccccaagtgctatgaag
atgttggatcagatgcgtagccaacttgagtcagaacttaaaagacatgggatcattcct
aatgacatatcgagttgtagccagaactcgcgtgaccctggtatactccgtgccgtccta
gctgtgggattgtatccaatggtggggagattgtgcccatcttttggtaataatcgaaga
tctttggtagagactgctagtggtgccaaagttcgtgtgcattcgctctcaaacaacttc
aacttgtcttcaaagaagtatgatgagtctttagttgtgttcgatgagatcacacgtgga
gatggaggcatgcacatacgaaactgtaccgttgctcgcgatctccctttgttactggtc
tcaacagagatagctgtagctcctacagagaggagtgatgctgatgatagtgatggcgag
gaagaagaagaagaagatgaagaaacaggagaagaagaagatgaagaagaggggatgaat
atacataaagcagagagtaggcgtgaagagaacatgatgtcttcacctgaaaattcagtt
aagttagtagttgatcggtggctgcctttcaaaaccacagcccttgaagttgctcaaatg
tacattctgcgggagagattaacagcatccattttgttcaaggtaagacatccacgggaa
aatctaccgcctcatcttggagcttctatgtatgcaatagctcgtattctctcatatgat
ggtcatgcgggactttcatctccatcggagtctatgaggccaaaacattcgaggactgag
atgtatgaaactggaggatgggaggaaaagccgaactctttcctcaactcactcttttgg
tctctgagtctgaaagagagcaagccttcttcttctggtcacgtgaataggaatcgacag
catggtttcaacacggttccaacagaagttgcatcaatgcatacgcagcaaaacatcaag
caaagaaaccccaaatcagctatcaatggtgatccgggtaagaaaaaggagaaaatgtat
gttaatcacaccaatgggattcaccagcctgaagctgcatctattgctaagcaatcaaag
cacagatcaggcaacggttcgggttcaggtaacaagaaagagaacatgccttcggatcag
gtctatggtaatcagcaaccaaactcagctccaagagaaggtgcctcaccggtggctaat
catcagatcagtaagaaaacaaagaacaggccagccaacatctcggattttggcaagaag
aaaacacagtatgttccaaagatagatctccataaaaaggaacgcgaagacaaagtagaa
caaaggggaaatgcatga
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