Brassica rapa (field mustard): 103865262
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Entry
103865262 CDS
T03449
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 2
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
brp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103865262
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103865262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103865262
04121 Ubiquitin system [BR:
brp04121
]
103865262
03400 DNA repair and recombination proteins [BR:
brp03400
]
103865262
Enzymes [BR:
brp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103865262
Spliceosome [BR:
brp03041
]
Complex B
Other components
Prp19 complex
103865262
Complex C
Prp19-CDC5 complex
103865262
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
U-box type E3
103865262
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
103865262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_DCAF12
Beta-prop_SPT8
NBCH_WD40
eIF2A
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WD40_like
PROPPIN
U-box
PAS_11
zf-Nse
SKA1
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
103865262
NCBI-ProteinID:
XP_009141306
LinkDB
All DBs
Position
A04:complement(17510846..17515513)
Genome browser
AA seq
525 aa
AA seq
DB search
MNCAISGEVPEEAVVSTKSGLLFERRLIERHILDYGKCPVTGEPLTIDDIVPIKTGKVIK
PKPVHTASIPGLLGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKK
ERDEARQLLAEVERHIPAAPEAVTANAALSNGKRAAGDEEMAPDAKKLCPGISAEIITEL
TDCNAALSQKRKKRQIPETLASIDSLERFTQLSSHPLHKTNKPGICSMDILHSKDVIATG
GVDATAVIFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRDSGDRNYA
CGHTLNDHSAEVRAVTVHATNKYFVSASLDSTWCFYDLSSGLCLAKVSDDSEKVDYTAAA
FHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTSISFSENGYFLATAAEDGVRL
WDLRKLRNFKSFLSADANSVEFDPSGSYLGVAASDIRLYQTASVKAEWNLIKTLPDLSGT
GKATCVKFGPDAQYVAVGSMDRNLRIFGLPGDQIANADDDSAQDS
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaactgtgcaatttccggagaagttccagaggaggcagtggtttcaacgaagtcaggt
ttgctcttcgagaggcgattaatcgagaggcatatattggattatgggaagtgcccggtt
actggagaacctcttaccattgatgacattgttcccatcaaaaccgggaaggttataaaa
ccgaagccagtgcatacagctagcatccctggattgcttggaactttccaaaatgaatgg
gacggtttgatgctatcaaattttgcgctggagcaacaactgcatactgcgaggcaagag
ctaagtcatgccttgtatcagcatgattctgcatgtcgcgtgattgctaggcttaaaaaa
gaaagagatgaagcgcgccaattgcttgcagaggttgaaaggcatatacctgcagccccg
gaagctgtgacagctaatgctgctcttagcaatggtaaacgagctgctggtgatgaagaa
atggctcctgatgcgaagaagttgtgtcctggcatttcagctgaaattatcacagaattg
actgattgcaatgctgctctttcccagaagcgcaaaaagcgacagattcctgaaacattg
gcttcaatagattctttggagaggttcactcagctatcaagccacccactccacaagacc
aacaaaccgggcatttgttccatggatatcctacattctaaggatgtcattgctaccgga
ggagtggatgcaactgctgttatctttgatcgcccttcagggcagatcttgtcaacacta
actggtcactcgaaaaaggttacaagcgtaaaatttgtaggtgacagtgatcttgtcttg
actgcttcggctgacaagacagtccgtatctggcgggattctggggataggaattatgct
tgtgggcatacattgaatgatcactctgcagaggtgcgagctgtaactgtgcatgccaca
aataaatactttgtgtcggcatctcttgacagtacatggtgcttctacgatctttcgtct
ggcttatgccttgcaaaggtatccgatgattctgagaaggtggattacacggctgctgct
tttcatcctgatggtctcattctcggaaccggtacttctcaatctgttgttaagatttgg
gatgttaaaagtcaggcaaatgtggcgaagtttgatggacacaccggtgaagttacctct
atatctttctctgagaatggttacttcctcgcgactgctgccgaggatggtgttaggttg
tgggatctgcgcaagttaaggaacttcaagtcattcttatccgcagatgcaaactctgtg
gagtttgaccctagcggatcttatcttggtgttgctgcatcagatatcagactataccag
acggcaagtgtgaaagctgaatggaaccttatcaaaacactcccagacctctcaggcact
ggtaaagctacatgtgtgaagtttggtccagatgcacaatacgttgcagttggttccatg
gaccgtaacctacggatatttggtcttcctggtgaccaaatagccaatgccgatgatgac
tctgcacaagactcctga
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integrated database retrieval system
