Brassica rapa (field mustard): 103865551
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Entry
103865551 CDS
T03449
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103865551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103865551
03019 Messenger RNA biogenesis [BR:
brp03019
]
103865551
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103865551
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103865551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
103865551
NCBI-ProteinID:
XP_009141600
LinkDB
All DBs
Position
A04:complement(18573026..18577742)
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AA seq
925 aa
AA seq
DB search
MENSRRPFDRSRDPGPMKKPRLSDVNSNARQLTSQRTIGTASSSRFRAAGGRELESDPNG
EAYQPQPVHPHYELVNQYKSALSELTINSKPIITNLTIIAGENVHAAKAVVATVCNNILE
VPSDQKLPTLYLLDSIVKNIGRDYIKYFAAKLPEVFVKAYRQVDPPMRSNMRHLFGTWKG
VFHPNTLQQIEKELGFNAKSDGSAAVSSTGRADLQSQRPPNSIHVNPKYLERQRLQQSGR
AKGMVTDVPEIASNLARDSDRLERVSSIASGGSWAGPAKVNTIRRPQRDSLSEPLYERDM
ESISGEYDYTSELPHNSRPVIKKVNARVTDDGCEKQWYETVSRGPDLISDQRDVLHTKSR
LSNYATARLENLESSGPSRNTGVPYDSWKNSEEEEFMWDMHSRLSETDVATVNPKNELHT
PEESERLESDNHLLKRPRLSALDPRFDPTSTNSYSSEQKDGSVYGRLSSTSNAARKGIQP
QSKVSDRHSPLRDSTFKQNVTKQDSRRTHSLTQRDPRASRFPAKSQSVLRDDFVRPQLKK
SNAIDLPDSFQGEKFDSKSAGLTIASEATGQRNMSDLLEAVMKSGILSNNLTNGAMKEES
SQVNPRALTVSAASKPKASPNSVAAKKISARLKLERSSAPLGSDPVSLTGVTSAQTSKES
SKAPDPISSLLSSLVSKGLISASKMELPSLVQCAAAPFISQDHSPDHSTNSSTSISVVPS
DAQSLVVVEKGPSTAPKVAPAETAVSEPENLIGLKFRADKIRKLHPSVISSLFDDFPHLC
TSCGVRLKEKEELDRHMELHDKKKLELSGTNSKCRVWFPKADDWVAAKAGELEPEYDEIL
SEPESEDGPAVAADENQCACILCGEMFEDCFSQGTGQWLFKGASYLTIPPSNSEANGPIV
HAGCLTKSSLPSLGIGNAIKQEMIE
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcgcgtagacctttcgatagatcgagagatccagggccgatgaagaagccc
aggctcagcgatgtgaattcgaacgcgcggcagttaacgtcgcagagaacgatcggtacg
gcgtcgtcttcgagatttcgagctgctgggggaagagaattggagagtgatccgaacggg
gaggcttatcagccgcaaccggttcatccacattacgagcttgtgaaccagtataagtcg
gctttatctgagctcacgatcaactcgaagccgatcataacgaacctcacgataattgct
ggagagaatgttcatgctgctaaggccgttgttgccaccgtttgcaacaacatcctcgag
gtaccaagtgatcagaagctgccaacattgtacctattggacagcattgtgaagaacatt
ggaagggattacattaagtactttgctgccaagcttcctgaggtatttgttaaggcttac
agacaagttgaccctcctatgcgttctaatatgcggcatctctttggaacttggaaagga
gtctttcatccgaacacacttcagcaaattgagaaagaacttggttttaatgctaaaagt
gatggctcagctgctgttagtagcacaggccgagctgacctgcaatctcagcgcccacca
aatagcatccatgtgaatccaaagtatctagaaaggcaacgccttcaacagtcaggaagg
gcaaaaggaatggttactgatgtccccgagatcgcatccaatttggcaagggattcagat
agactggaaagagtttcaagcatagcatctggaggctcgtgggcaggtccagctaaagta
aataccattcgacgacctcaaagagactcactcagtgaacccctctacgagagagatatg
gagtcaatatcaggggaatatgattatacttctgaactaccgcataattctagaccagtg
attaagaaagttaatgcaagggttactgacgacgggtgtgagaaacagtggtacgaaacc
gtgagcaggggtcctgatctgatttctgaccaaagggatgtgttacatactaaaagcaga
ctttccaactacgcgactgcgagactagaaaatttggaatcaagtggtcctagtagaaac
acaggtgtgccgtatgatagttggaaaaactctgaggaagaagagtttatgtgggacatg
cactcaaggttatctgaaacagatgtggccactgtcaacccaaagaatgagcttcacaca
ccagaggaatcagagagattggaatctgacaatcacctcttaaaacgaccaagattatca
gctctcgacccaaggtttgatccgacttcgacaaactcatattccagcgagcaaaaagat
ggaagtgtttatggccgcttgagttcaacctctaatgcagctagaaagggtattcagcct
caatctaaggtgtcagatagacactcgcctttacgtgattcaacttttaaacagaatgtg
accaagcaagattctagaagaactcattccctcactcaacgtgatcctagggcttcacgg
tttccagcgaaatctcaaagtgtcctcagggatgactttgtgcggcctcagttaaaaaaa
tcaaatgcgattgacctacctgattcatttcagggggaaaagttcgactctaagtcagca
ggacttactattgcttcagaagctacaggacaacgcaacatgagtgatttgctggaagca
gtcatgaagagtggaatcctttctaataatttaactaatggtgcaatgaaggaggagagt
tcccaggttaacccaagggcactaaccgtgtcagcagcctctaagcctaaggcttcgcca
aattcagtggctgctaaaaaaatatcagctcgtttaaaattggaacgatcctctgcaccg
cttggttcggacccagtgtctcttaccggtgtcacatcagcacagacatcaaaagagagt
agtaaagccccagatcctatttcgtccctcttgagctccttagtttcaaagggcttgata
tctgcttccaagatggagctgccatctcttgtacaatgtgcggctgctcctttcatatca
caagaccatagtcctgatcattctaccaatagctccacttctatatctgtggttccgtct
gatgcacagtcattggttgtggtggagaagggtccttctactgctccgaaggtagcacca
gccgaaacggcagtttcagaacccgaaaacctcataggattgaagtttagggcagataag
atccgtaaacttcacccctctgtgattagtagtctctttgatgactttccacatctctgc
acctcctgtggcgttcgccttaaagaaaaggaagaacttgacaggcacatggagctgcac
gataagaagaagcttgagttaagtggcacaaacagtaaatgtagggtttggtttccaaag
gctgatgattgggtagcagcgaaagcgggagagctagaacctgaatatgatgaaattctg
agtgaacctgaaagtgaggatggtccagccgtagctgctgatgagaaccagtgcgcgtgt
atattatgtggagagatgtttgaggactgtttcagtcaaggaacgggtcaatggctattc
aagggagcttcttaccttaccattcctccatccaatagtgaagccaatggaccaatcgtc
catgcaggttgtctgaccaagagttctttgccgagcttgggaattgggaatgcaataaaa
caggaaatgattgagtag
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