Brassica rapa (field mustard): 103865889
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Entry
103865889 CDS
T03449
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103865889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103865889
Spliceosome [BR:
brp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
103865889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_IFT122_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_WDR75_1st
PRP4
Beta-prop_WDR19_1st
Beta-prop_WDR41
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
WD_LRWD1
Beta-prop_Vps41
eIF2A
Beta-prop_SPT8
WD40_like
Nbas_N
Motif
Other DBs
NCBI-GeneID:
103865889
NCBI-ProteinID:
XP_009141994
UniProt:
M4DKA0
LinkDB
All DBs
Position
A04:complement(20323642..20326642)
Genome browser
AA seq
545 aa
AA seq
DB search
MEPNNEDNVSFIPSASPAVPITQITAAPVPGVSPIPPPSFPPPMAPIPVARPPTFRPPQN
GGAKASDSDSESDDEHYVISEESKQVRERQEKAMQELLIKRRAAAIAVPTNDKSVRDRLR
RLGEPITLFGEQEMERRARLAQLMARLDIGGQLDKLLQAYEDDAAPKEEVDEEELQYPFF
TEGPKELREARIEIAKFSIKRAAVRIQRAKRRRDDPDEDVEAETKWALKQAKGLALDCSN
FGDDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQVTNKIAVLKDHKERATDVVFSPVDD
CLATASADRTAKLWKTDGTLLQTFEGHLDRLARVAFHPSGKYLGTTSFDKTWRLWDINTG
AELLLQEGHSRSVYGIAFQQDGALAASSGLDSLARVWDLRTGRSILVFQGHIKPVLSVTF
SPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVN
IWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSSNEEEEEDQGGET
MDVDL
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggaacccaacaatgaagataatgtttcattcataccatcagcttcgcctgcagttcct
attactcaaatcacagcagctccagttccaggcgtctctcccataccacctccttctttt
cctccaccaatggctccaataccagtggcccgcccacctacttttaggccaccacaaaac
ggtggagcgaaagctagtgactcagattctgaatcagatgatgaacattatgtaatatct
gaagagagtaagcaggtcagggaaagacaagagaaggcaatgcaagagctgctgataaag
cgccgtgctgctgctatcgcagtgccaacaaacgacaaatccgttagagaccggcttaga
cgacttggtgagcccattactctgtttggagaacaggagatggagagaagagctaggctg
gctcagcttatggctaggcttgacatcggcggacagttggataaactgctacaagcttac
gaagatgacgcggctccaaaagaagaagtggacgaggaagagcttcagtacccgtttttc
actgagggtccgaaggagctgagagaggctaggatagagattgctaagttttcgattaag
agagctgctgtgaggattcagcgtgctaagcggaggagggatgatccagatgaagatgtg
gaggcagagactaaatgggctttgaagcaggctaaaggcttggctcttgattgcagtaac
tttggggatgatcgtcctctaactggctgctccttctcaagagatggaaagatacttgcc
acatgttctctgagtggagttactaaactatgggagatgcctcaagttacaaacaagatt
gctgtcttgaaggaccacaaagaacgtgcaaccgatgtagtcttctcccctgtggatgac
tgtctagcaactgcttccgctgatcgaaccgcaaagctgtggaaaaccgatggcacactc
ctacaaacttttgaaggtcatttggaccgtcttgcacgtgttgccttccacccatcaggg
aagtacctagggacaacaagcttcgacaaaacatggagactgtgggacataaacacagga
gcagagctgcttttgcaagaaggtcacagtcgcagcgtctacggaattgcgtttcagcaa
gatggtgcattagcagcttcctctgggcttgattcacttgcacgggtttgggatctccgc
actggtaggagtattctcgtcttccaaggacatatcaaaccggttctctcagtgactttc
tctccaaatggctatcacttagcatctggtggtgaggataaccagtgccgtatttgggat
ttgagaatgagaaagtcgttgtatatcataccagctcatgctaaccttgtgtctcaagtt
aagtatgaaccacaagaaggctacttcctggccactgcatcatacgacatgaaagtcaat
atatggtcaggcagagacttctcgcttgtgaaaagcttagcaggacacgagtcaaaagtc
gcttctctggatatcactgcagatagctcgtgtatcgcaactgtgtcacatgaccgtacc
atcaagctttggacaagcagtagcaacgaagaagaagaagaagaccaaggcggagaaaca
atggacgtagatctctag
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integrated database retrieval system
