Brassica rapa (field mustard): 103866107
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Entry
103866107 CDS
T03449
Name
(RefSeq) probable polygalacturonase At2g43860
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Module
brp_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103866107
Enzymes [BR:
brp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
103866107
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
LysM3_LYK4_5
NosD
Motif
Other DBs
NCBI-GeneID:
103866107
NCBI-ProteinID:
XP_033145459
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Position
A4
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AA seq
410 aa
AA seq
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MIHKTSCLLLLPLTLIFLDFILISSLAKPTPITSLNVLTYGAKPDGLKDSTKAFLAAWQV
ACASPNPTTIIVPKGRFLVRNLVFQGNKCTNAPISFRIAGSIIAPEDFRVIASSLQWIMF
DGVTNVSIYGGVLDAQGSSLWKCKNSGGKKCPTGAKTLLFTDSNNISIYGLTSINSQKFH
IVIDQSNNVKIDGVKVSADADSPNTDGIHIENSHSVNITNSRIGTGDDCISIGPGSTHVS
IQGIQCGPGHGISIGSLGRSEDEQGVENVIVSNVDFMSTDNGVRIKTWGKDSKSFVRNIV
FQHIKMKMVKNPIIINQHYCLDKPCPKKESGVEISNVRYEDIQGTSNTEVAVMLDCSKDK
PCTDIVMGNVNLVLQMVNGSAQASCNNANGLANDVVVPFTPCLKRDLLLT
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgattcacaaaacatcatgtcttcttcttcttcctctgactctcatctttcttgatttc
atcctaatctcatcattagccaaaccgaccccaatcacatccctcaatgtcttaacctac
ggagctaaaccagatggcttaaaagactcaaccaaagccttcttagccgcatggcaagtc
gcatgtgcctctcctaatcccacaactattattgtaccaaaaggacggttcttggtcaga
aaccttgtattccaaggcaacaaatgtacgaatgctccaatatcttttcgtatagccggt
tcaattattgcaccggaggattttagagttatcgcaagctcactacaatggatcatgttc
gatggagtcactaacgtttcaatctacggtggtgtacttgacgcacaaggctctagtttg
tggaaatgcaagaacagtggtggcaaaaaatgccctactggtgctaagactttgttattt
actgattcgaataacatcagtatctacggtttaacgtcgatcaatagccagaagttccat
atagttatcgaccagagcaataacgttaagattgacggcgttaaagtttctgctgatgcg
gatagccctaacaccgatgggattcacatcgagaactctcactcagtgaatatcactaac
tcaagaattggaaccggggacgattgcatctccatcggtccaggatccactcatgtttct
atacaaggcattcaatgcggtccaggccatggcatcagtatcgggagtcttgggagatca
gaggacgagcaaggagttgagaacgtgatcgtgagtaacgtggatttcatgtcaacggat
aacggagttaggatcaagacatggggaaaagatagcaaaagtttcgtacgaaacattgtt
ttccaacatattaaaatgaagatggtcaagaacccgattatcataaaccaacactattgt
cttgacaaaccttgccctaaaaaggaatctggagttgaaatatcaaatgtgagatatgaa
gatatacaagggacatcgaatacggaagtggcggttatgttggattgtagtaaggataaa
ccatgtaccgatattgtaatgggtaatgtgaatctcgtcttgcaaatggttaatgggtcg
gctcaggcttcttgcaacaatgcaaatggattagctaatgatgtcgttgtcccgttcact
ccttgtctaaagagagacttgcttttgacatga
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