Brassica rapa (field mustard): 103866358
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Entry
103866358 CDS
T03449
Name
(RefSeq) SWI/SNF complex subunit SWI3A
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103866358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103866358
03036 Chromosome and associated proteins [BR:
brp03036
]
103866358
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103866358
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103866358
PBAF complex
103866358
GBAF(ncBAF) complex
103866358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
103866358
NCBI-ProteinID:
XP_009142513
UniProt:
M4CJQ7
LinkDB
All DBs
Position
A05:complement(181232..183738)
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AA seq
514 aa
AA seq
DB search
MEVTTDRSSSKDAELELELELYTIPAQSSWFVWDDIHEIERREFTEFFSESSITRTPKVY
KEYRDFIINKYREDTSRRLTFTSIRKYLIGDVNLLRKVFLFLEKWGLINFLQKSDDVVVE
ESEAKIEQGTTPAGIRVTSTPNSTRPVIAPPLVEERAEPALTFPPLTSYSDVFKKPALVC
GQPCPSHSAAFYEHNNKSNLCDKCFKNGGENNSAELIGSSAAAAWTEEETLLLLESVLKH
GDDWELVAQSVSTKSRLDCISKLIELPFGDFLMGSASGRLRSSVPTEDEHLSSPSNLVEQ
MKTDGQEHKETETREENEEDEPPAKRKRAAMMSDGDSYLMKQVAAMACKVGPSVTTAAAK
AAIAALCDEASCPKDIFETTSDYKNSAADRSVGDKDTSDIEEQQEEKEGLEDLPVGLRMR
VSVATALGAAAAHAKVLADQEEREMELLVASVIDQQLKKMKSKLKFLEELEVIMDAEEKV
MEGAKETIIQERISVLQSAFSGGITKRWDHTCVK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgacgacagatcgaagcagcagcaaagacgcagagcttgagcttgagcttgag
ctctacaccatccctgctcaatccagttggttcgtatgggatgatatacacgaaatcgag
agacgcgagtttactgagttcttcagtgagagctctatcactcgaaccccaaaggtctac
aaggagtacagagatttcatcatcaacaagtacagagaagacacctctcgcaggctcacc
ttcaccagcatccgcaagtacctcatcggcgatgtcaatttgctccgcaaagtgtttctc
ttcctcgaaaaatggggtttgatcaatttcctccagaaaagtgatgatgtggtagtggag
gagagtgaagctaagatcgaacaagggaccacccccgctgggattcgagttacttctacc
cctaattctacgagacctgttatcgcacctccccttgttgaggaaagagctgagcctgcc
ctcacatttcccccattgacctcttactcagatgttttcaagaagcctgcgttggtttgt
ggacaaccttgtccttctcattctgctgctttctatgaacataataacaagagtaactta
tgcgacaagtgtttcaagaatgggggggagaacaattccgcagagttgattggcagttct
gctgcagctgcctggaccgaggaagagacccttctcttgctagaatctgtgctcaaacat
ggagatgactgggaactcgttgcacaaagtgtttctactaagtctagacttgactgtatc
tccaagctcattgagctcccgtttggagactttctgatgggttctgcctccggaagactc
agatcctctgtccccaccgaggatgaacacctttcgtctccatccaatcttgtggaacag
atgaaaactgacggacaagaacacaaggaaacagagacgagggaagaaaatgaagaagat
gagcctccagcaaaaaggaaacgtgctgcaatgatgtcagatggtgatagttaccttatg
aaacaggtcgcagcaatggcatgcaaagttggtccatctgtcacaaccgctgctgcaaaa
gctgcaattgctgctctttgtgatgaagcctcttgtcctaaagatattttcgaaacaacc
agtgattacaaaaattctgcggctgacagatctgttggagacaaagatacatcagatatt
gaggaacagcaagaagagaaagaggggcttgaggacctacccgtaggtttaaggatgaga
gtgtcagtggcaacagctcttggagccgcggctgctcatgcaaaagtcctggctgatcaa
gaagaaagagagatggaattgttagttgcgagtgtaattgaccaacagctgaagaagatg
aagagcaagttgaagtttctggaggagttggaagtgataatggatgcggaagagaaagtg
atggagggggcaaaggaaacaattatccaagagaggattagcgttctgcaaagcgcgttt
agtggcggtattaccaaacgttgggatcatacttgcgtgaaataa
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