Brassica rapa (field mustard): 103866389
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Entry
103866389 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103866389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103866389
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103866389
Spliceosome [BR:
brp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103866389
Complex B
103866389
Complex C
U2 SnRNP specific factors
103866389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103866389
NCBI-ProteinID:
XP_009142546
UniProt:
M4CJT0
LinkDB
All DBs
Position
A05:313654..316753
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AA seq
732 aa
AA seq
DB search
MSNRNSQRFRGGDNSEDADVDNIDFIDNEEEEEQAVHNGGGDDEDEIDPLDAFMEGIHQE
MKSAPPPKPKAKAERYKDDDDDHVVSFLKAKKDLGLTLAADALNAGYNSDEEVYAAAKAV
DAGMLEYDSDDNPIVVDKRKIEPIQALDHSSIDYEPINKDFYEEVDSISRMSEQEALDYR
HSLGIRVSGFDVPRPVKTFEDCGFSSQIMSAIKKQAYEKPTTIQCQALPVVLSGRDVIGI
AKTGSGKTAAFVLPMIVHIMDHPELRREEGPIGVICAPTRELAHQIYLEAKKFSKAYGLR
VSAVYGGMGKHEQFRELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLG
FEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEAGMANEDITQVVN
VIPSDADKLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNAFKVAALHGDKDQAS
RMETLQKFKSGVYHVLVATDVAARGLDIKSLKTVVNYDTAKDMDMHVHRIGRTGRAGDKD
GVAYTLVTQREARFAGELINSLVAAGQNVPPELMDLAMKDGRFKSKRDGRKGGGKKGRGR
GGGGGNRGVRGVDFGLGIGFNSESSGTPSQAAPSRKGVINSVRTGVMAQFKNSFVAATPS
NPQSQGGYPNKRPSLMGFVSGGTIGGDMGRTQTQAPPVAASHNASLHNSSQKTPQSSEER
PRERKRRSGWDN
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatcggaactctcagcggtttcgcggcggagacaactccgaagacgccgatgta
gacaacatcgatttcatcgacaacgaagaggaggaagaacaagccgttcataacggtggc
ggcgacgacgaagacgagatcgatccactagacgcgttcatggaaggaatccaccaagag
atgaagtctgctccgcctcccaagccaaaggcgaaagcagagaggtacaaggacgacgac
gacgatcacgtcgtgagtttcctcaaggccaagaaggatctgggcctcacgctagctgcc
gacgcgctcaacgcgggctacaactccgacgaggaagtctacgctgccgccaaggcggta
gacgcggggatgctcgagtacgattccgatgataatcccattgttgtcgataaaaggaag
atcgagcctattcaagctcttgatcacagctccatcgattacgaacctattaacaaagac
ttctacgaggaggttgattcaatatccagaatgagtgagcaagaagctttggattatcgt
cacagtttggggattcgtgtatccggtttcgatgttcctaggccagtgaagacctttgag
gattgtggcttctcctcacagatcatgagtgctatcaagaaacaagcttatgagaaaccc
acaaccatccagtgtcaggctttacccgttgtgttatccggtagagatgttattggtata
gctaaaactggttcagggaagactgcagcttttgttcttcctatgattgttcatattatg
gatcaccctgagcttcggagggaagaaggtcctattggtgtcatatgtgctccaactagg
gaacttgctcatcagatatacttggaagctaagaagttttcgaaagcgtatgggttgcga
gtctcagctgtgtatggtggaatggggaagcatgagcagtttagagagctcaaggcggga
tgcgagattgttgttgctactcctgggaggttgatagatatgctgaagatgaaggctttg
acgatgatgagagcctcttatttggttcttgatgaggctgatcggatgtttgaccttggg
tttgagccgcaggtgaggtctatcgttggtcagattcgtccagatcgtcagactttgctg
ttctcagctactatgccttggaaagttgagaagttagctagggagatcctttcagatcct
attagagtcactgttggtgaagctgggatggctaatgaggatatcacacaagttgtgaat
gtgataccatcagatgctgataaactcccttggctacttgagaagctacctggaatgatt
gatgaaggtgacgtgttagtgtttgcttctaaaaaagccactgttgatgagattgaggct
cagcttactctgaatgcttttaaagtggctgcccttcacggtgataaagaccaggcctca
cgaatggaaactttgcagaagttcaaatctggagtttaccatgtgctagttgctaccgat
gttgctgccagaggtcttgatatcaagtcgcttaagacagtggttaactacgacactgca
aaggacatggacatgcatgtacatcgtattggtaggactggtcgtgctggtgacaaagac
ggggttgcctacacgcttgttacgcagagagaggctagatttgctggtgaattgataaac
agtctggttgctgctggtcagaatgtgcctccagaactcatggatctcgccatgaaggat
ggacgattcaagtccaagcgtgacggaagaaaaggaggtgggaagaaaggtcgaggacga
ggcggtggtggtggaaatagaggagtacgaggagttgattttggtcttggtattggcttt
aactcggaatcaagtgggacaccgtctcaagctgcaccaagtagaaagggggtgatcaat
tctgtgaggacgggagtaatggcccaattcaagaatagctttgtggctgctacgccatcg
aacccacaaagccaaggaggctatccgaacaagagaccatctctaatgggatttgtctca
ggtggaaccattggtggggacatgggtagaactcagactcaagcccccccagtagcagct
agtcataatgcttcattgcataactccagtcaaaagactccacagagttctgaagagcga
ccaagagagaggaaaaggaggtctggttgggataattga
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