Brassica rapa (field mustard): 103866427
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Entry
103866427 CDS
T03449
Symbol
CCA1
Name
(RefSeq) cataract, congenital, cerulean type, 1
KO
K12134
circadian clock associated 1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
103866427 (CCA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
brp03000
]
103866427 (CCA1)
Transcription factors [BR:
brp03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
103866427 (CCA1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
103866427
NCBI-ProteinID:
NP_001288869
UniProt:
F5B4H3
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Position
A05:complement(617246..620122)
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AA seq
554 aa
AA seq
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METNSSGEDLVVKTRKPYTITKQRERWTEEEHNRFLDALRLYGRAWQKIEEHVATKTAVQ
IRSHAQKFFSKVEKEAEAKGVPVAQTLDIAIPPPRPKRKPNNPYPRKTGTGSLPISKPGL
NDGKESLGSGKVSLPETTNEDLQEDNCSDCLTHQHLSAASNASTFLEFLPSREQEQGNNK
ESNSANYSEPQTYPRHIPLLVPLGSSITTSLSHAPPSDPDENSHHPHTVSGHHQSFPDHI
MSTLLQTPALYTAASFASTFGGGGPQGNLAAMAAATVAAASAWWAANGMLPLCAPFSSGG
LTCHPPATAYGPSGEVDHTKTVDQEHSEASKARSSLESEEAKNGSKPDCHHHPCAATETD
AKGSDGARDRKQVDRSSCGSNTPSSSDDVEADALVERQENGGTTNEEVKEVDGDTTNNPQ
TSESNARRSRISSSNLADPWKSVSDEGRIAFRALFAREVLPQSFTYKREEGQQQRYPMEL
DLNSAADDQEENRNIAFLGASKQQLLSRGRTGFKPYKRCSMEAKESRVISNTNPIISVEQ
KDPKRIRLETQTST
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggagactaattcgtctggagaagatctggttgttaagacgagaaagccgtatacgata
acaaagcaacgtgaaagatggactgaggaagaacataataggttccttgatgccttgagg
ctctacggtagagcctggcaaaagatcgaagaacatgtagcaacgaaaactgctgtccag
attagaagccatgctcagaaatttttctccaaggtagagaaagaggctgaagctaaaggt
gtaccagtggctcaaacgctagacatagctatccctcctccgcgccctaaacgaaaacca
aacaatccttatcctagaaagaccggaactggatctctccccatctcaaaaccgggtctg
aatgatggaaaagagtcccttggatcaggaaaagtttcgcttcctgagacgaccaatgaa
gatctgcaggaagacaactgctcagactgtctcactcatcaacacctctctgctgcatca
aacgcaagcacttttctagagttcttaccttcacgggaacaggaacaggggaataacaag
gagtcaaactcagccaattacagtgaacctcagacttatccaaggcatatccctctgcta
gttccattggggagctccataacaacctctctgtcacatgctcctccttcagatccagac
gagaacagtcatcatccccacacagtttcaggccatcatcagtcctttcctgaccatatc
atgtccacccttttacaaacaccagctctatacacagctgcatctttcgcctccacgttt
ggtggcggcggcccacaagggaacttagccgccatggctgcagccaccgttgcagctgca
agtgcttggtgggccgccaatggaatgctacctctctgcgctccttttagctcaggtggt
ttgacctgtcaccctccagctactgcttatggaccttccggtgaagtagaccacacaaaa
acagtggatcaagaacactctgaggcttcaaaggctagatcttcgttggaatcagaggag
gctaaaaatgggagtaaaccagattgtcatcatcatccttgtgcagcgaccgagactgat
gcaaagggatcagatggagcgagggacagaaagcaagttgacaggtcttcttgtggctcg
aacactccttcgagtagtgacgatgttgaggctgatgctttggtggagaggcaagagaac
ggtggtaccaccaatgaggaagtgaaagaagtggatggggacactactaacaatccacaa
acttcagagtctaatgcgcgacgcagtagaatcagtagctctaacttagctgatccatgg
aagtctgtttcagatgagggacgaattgcttttagagctctgtttgcaagagaagtgttg
ccacaaagttttacatataagagagaggagggtcaacaacaaagatatccaatggagctt
gatcttaactcagcagctgatgatcaagaagagaacagaaacatagcgtttttgggtgct
tcaaagcagcagctattaagtagaggaaggacaggtttcaagccttacaaaagatgttca
atggaagctaaagaaagtagagtcatcagcaacaccaatcctatcatcagtgttgaacag
aaagatcctaagcggattcggttggaaacacaaacttcaacatga
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