Brassica rapa (field mustard): 103866455
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Entry
103866455 CDS
T03449
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC103866455
KO
K24155
rabconnectin-3a
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
103866455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
brp04131
]
103866455
Membrane trafficking [BR:
brp04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
103866455
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
103866455
RAVE complex
103866455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR5
Beta-prop_EML
Beta-prop_WDR3_2nd
WDR55
Beta-prop_EML_2
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
EIF3I
Motif
Other DBs
NCBI-GeneID:
103866455
NCBI-ProteinID:
XP_033148401
LinkDB
All DBs
Position
A05:787596..797919
Genome browser
AA seq
2392 aa
AA seq
DB search
MPETSQDPISLTDPIDQLPLRLLRSEIVPPAPSRSNSSIDWLPDFAGYSWLAYGASSLLV
VSHLPSPLRGEDSANGPLFRQILEVSGDVSSPVTAVSWSPVTPSVGELAVGSGSYVRLFA
RDLSDLNGSFYWSQSAVLLQETKVEAIEWTGCGDGMIVGGTDIVLWKRKNQSWEIAWKFP
GDYLQDLVSSTWSIEGPFASAASWSKFPSECDEAGRGVLAYYSDGGIYRKVELPHPQRIS
TIQWRPVAAEQSVECAGKSVRNVLMTCCLDGAVRLWCEVDGGKSKKGMRDGHKKSFCVAA
VIEINQVLDGCLGRDLFVFWGTRSGGILKTIEGANQLFTTEKYDHENVGNCEWLVGQGPG
KSASLWAVHCLDDISPMRFPRITLWASQETNGTSLEPLSITDATGFSDRLPLKKVSVLRN
NLYGTPDICSSIYLSSRNTIYWSSLHTVKSHALEDSPPDKSSVLQCITEKVLDLDGHGGK
ILQVAFTPIISEAGYTASLDYNGLIIIWSSCDYLNRAIDHPISVSSWKHCGRLQNQELRL
KYTSICWAPSSLNDESFLLAGHVQGIDCYSVRKGGSGYGGFLTHYICTIPLAVSQPFEDG
PTSIFARPLPDSCGKTFKTNRFLLLSVWMKDKRFDALSWKVTLHHFDAAGSTCDCHFHDF
DSMESGKWLFEDTFAGKKNCIAVRSCSSELPESHRYDEVTSFAVVNPSGRALEKDMNIES
QAYTMATGHDNGSLKLWRSSLQESSTPSIMWELVGMLTIGKSPVSAISLTESGHKIAALC
TENHSKAVRTISVWEIVHLLDSGVFILEDKLHVDAEVVAVRWSTVGNDQLILGVCTQNEM
RVYGIARQPCRSTSFAVSDYSSEAQIWQCFAVTRTFSAIHDLWWGSKAMTALAHNDYVSL
HGQWLAVTDKKQKTDNNPEIFAANLPKLVNTTEGRDSELLSNSMPLTATAYGSDTLKDTT
SMLHIVEKLGGALPLYHPHALLVAIRSGNWKRASAALRHLAENITSGDASVKDHGVKSDL
CQDILLSKYYEGSVSNGPNRKDFHWGGTSGSMLQNSQFQAGLQSNFSMDSYSPMVSHEIG
NPHSTSVYASLDEAGCRFWITLRFKQLYLARSSGKPASVEELDIDSSMIGWAFHSESQEN
LSGSLLPIESSWQQMRSLGFGFWCSDVAQLRPRMEKLARQQYLKNKKPKDCALLYIALNR
IQVLAGLFKISKDEKDKPLVGFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIGFFLLGG
EASSAINVCVKNLQDEQLALVICRLVDGQGGALESNLINKYILPSAVRRGDFWLASILKW
ELGEYHQSILAMAGSLENPANGSSTVTSNHISFVDPSIGLYCLMLTTKNSLKNAVGERNA
SNLSRWATLMTATAFSRCGLPLEALECLSASASGHGGTHQASGQSNGHLGTPRGVLELSD
PNSNWVSSGVSSTVDTRFKLSLAAHSLSKLLREATALLRSSEIVLCEKLSGFQHKLQTSL
ELFYQRFSLSSSFLRNTMSMSAYNSGLLLSMGYNVFQENSSSGRSLNKSQTNEDLLQYSA
LCKLILKATEENSFILSRIIAACSVTCFHSVPCLEENKVSSGPEPKLSNALRFYFQGILQ
SFSSFETTIRLCLNSSLEDVKTRLAVVLDLVEYCSRLAMAWILGDVDCLFRMVQPLTISY
FHGHMPYEVDLESLKRVYHQEVSVSVPDASDAGLNSIVENNEVGYPVSSIPGDERRLVTQ
ACFWRHVSDFVKHKMVSTSIDLDDGISNSESSEKFDAQTSFDSSGDIVCVTEKIMSVLGK
TLVSTIAQLSSYHVKQLVLSLKQKLEKRIQVPTLLWLHGCRESQANFINRAIPDSSTENE
DNSDLAVSVRFWTLCVDPHLVLEAFLLENFDISEWSKLKPLEDWSNMYREIKGKNELNVP
CNQDGLSSNEVASLANHASNSSQKTATASENSAFQDPKEIHKRTGELIQAICINAINHRQ
AALASNRKGIIFFNQEDGGPCYDQSNYIWSDADWPRNGWANSESTPVPTCVSLGVGLGDK
KGAHLGLGGATVGDFSLSKPWKSHRVPAYTGLGVSGLGWQTQEDFEQFIDPPPTVETVIA
SAFSSHPTMPLFLVGSSNTHIYLWEFGKDRATATYGVLPAANVPPPYALASISAVQFGPC
GHRFASAALDGTVCTWQSEVGGRSNVYPVESSICFNGFASDVKYISSSGSIVAASGYSSS
GANVVVWDTLAPPSTSQASISCHEGGARSISVFDNDIGSGSISPMIVTXGKNKKQRNADG
RSSTDGDQNKNGMLWYIPKAHLGSVTKISTIPRTSLFLTGSKDGDVKLWDAKAAKMIHHW
PKLHERHTFLQPNSRGYGGIIRAGVTDIQVCPNGFITCGGDGTVKFVSLRNS
NT seq
7179 nt
NT seq
+upstream
nt +downstream
nt
atgccggagacgagtcaggacccgatctcactcacagatccgatcgatcagttacctctc
cggctactacgatcggagatcgtcccgccggctccgtctcgatccaactcttcaatcgac
tggctccccgacttcgccggctactcatggctcgcttacggagcttcctctctcctcgtc
gtctcccacctcccttcccctctccgcggcgaagactctgccaacggaccgcttttccgt
cagattctcgaggtttccggcgacgtttcgtctccagttaccgccgtttcgtggtctcct
gttacgccgtctgtaggcgagctcgcggttgggtctgggagctacgttcgcctcttcgcg
cgtgatcttagcgatctgaacggttctttttattggagtcagagtgctgtgttgctgcaa
gaaacaaaagttgaagcgattgagtggactggatgcggggatgggatgatagttggtgga
actgatattgttttgtggaagagaaagaaccaatcctgggaaatagcttggaagttccca
ggggattaccttcaagatctggtttcctccacctggtcaatcgagggtccttttgcgtcg
gcagcttcttggagcaagtttccgtcggagtgtgatgaggcaggtagaggtgtcttggcc
tattacagtgacggggggatatatcgtaaagttgaattgcctcatcctcagaggatatcc
acgattcagtggagaccggtggctgcagagcagtctgtagaatgcgcggggaaatcagtg
aggaatgtgctgatgacgtgttgtttggatggggctgtaaggttatggtgtgaggtagat
ggtggaaagagtaaaaaaggcatgagagatgggcataaaaagtctttttgcgtggcagct
gtgatagagataaatcaggttttggatggttgtttggggagagatttatttgttttttgg
ggaactcgctcagggggtatattgaaaaccattgaaggtgctaatcaattgtttactacg
gagaagtatgatcatgagaatgttggcaactgcgagtggttagtagggcaaggccctggg
aaatctgcttctttgtgggctgtccattgtcttgatgacatctctcctatgaggtttccg
aggattacattgtgggcgagccaagaaacgaatggaactagtctggaaccactctctata
actgatgctacaggtttttctgatcgattaccccttaagaaagtttctgtattgagaaac
aacctttatggcacgccagatatctgctcttccatttatttatcttcacgcaataccata
tattggtcctccttgcacacagtaaaatcacatgccttagaagattcacctccagataaa
tccagcgtattgcagtgcatcacggaaaaagtattagatcttgatggtcatggtgggaaa
atcctacaggttgcctttactcctatcataagtgaggcgggatacactgcttctctggat
tataatggtttgataataatctggtcctcttgtgattatttgaaccgtgctattgaccat
cctatatcagtttcttcctggaaacattgtggacggcttcaaaatcaagagttaagattg
aagtacacgagtatatgctgggcaccttcatcattgaatgatgagagctttctacttgcg
ggacatgtacaaggcattgattgttatagtgtgaggaaaggcgggagcggttatggtggt
tttcttacccattacatatgtaccataccgttagcagttagccagccttttgaggatggt
ccgaccagcatatttgcaagacctcttccagattcttgtggaaagacattcaaaactaac
aggtttttgcttctaagtgtatggatgaaagataaacggtttgatgctctgtcatggaaa
gtgaccctgcatcattttgatgcagcaggaagcacctgcgactgtcattttcatgatttt
gacagcatggaatcgggcaagtggttgttcgaagatacttttgctggtaagaaaaattgc
attgctgttagatcatgctcttcagaattacctgaatctcatcgttatgatgaagtaact
agttttgctgtggtcaatccgagcggcagggccctagagaaggacatgaacattgaaagt
caagcttatactatggcaactggtcatgataatggctctttaaaactgtggagaagtagc
cttcaggaaagttcaacaccttccattatgtgggagcttgttggcatgcttaccattggc
aaaagtcctgtcagtgctatatctctaactgagtcgggacacaagatcgcagccctctgc
acagagaatcattcaaaagctgttcgaacaattagcgtatgggagattgtacaccttctc
gattcaggggttttcatactagaggataagttacatgttgatgcagaggttgttgctgta
agatggtcaactgtgggaaatgatcagctaattcttggagtttgcacacagaatgagatg
cgggtatatggtattgctcggcaaccctgcagaagtaccagtttcgctgtctctgattat
tcttcagaggcacaaatttggcaatgcttcgctgttactcgtacattttctgctattcat
gatttatggtggggatccaaagccatgactgcactggctcataatgattatgttagccta
catggtcaatggctggccgttactgacaagaagcaaaagactgataacaatccagaaatt
tttgcagccaatcttccgaaactagtgaatactacagaaggcagagactctgaattgtta
tctaatagtatgcctttaactgcgaccgcatatggttcagatactcttaaggacacgaca
agcatgttgcatattgtggaaaagttaggaggcgccttgccactctatcatcctcatgcc
ctccttgtcgctatacgttcaggcaactggaaacgagcaagcgcagctttaaggcatctt
gctgagaatattacttcaggtgatgcctccgtgaaggatcacggtgtaaagtcagatctt
tgtcaggatatccttttgtcaaaatattatgaagggtctgtctccaatggcccaaatcgt
aaggatttccattggggtgggacatctggttcaatgctacagaattctcagtttcaggca
gggttgcagtcaaatttcagtatggattcttatagtcccatggtgtcacatgaaattggt
aatccacattcgacttctgtctatgcaagtcttgatgaagctgggtgtagattttggatc
acacttaggtttaagcagctgtacttagctcgaagttctggcaaaccagcatctgtagaa
gagttggatattgactctagtatgataggatgggcttttcactcagagtctcaagaaaat
ctgtctggttctcttttacccattgaatcatcatggcaacaaatgcgctcactgggtttt
ggattttggtgttcagatgtagcacagttgcgcccacgaatggagaaactggcccggcag
caatacctgaagaacaagaaacctaaagattgtgcgcttctctacatagctttaaataga
attcaagttttggctggtctttttaaaataagcaaggatgagaaagataaacccttggtg
ggttttctttcacgcaattttcaggaagagaaaaataaggcagcagccttgaaaaatgcg
tatgtgctaatgggtaaacaccaactggagctggctataggtttctttctccttggaggt
gaagcttcatcggcgataaatgtctgtgtgaaaaatcttcaagatgagcagcttgcgctc
gtaatttgccggcttgttgatgggcagggtggggcactggaaagtaatcttataaataaa
tacatactcccatctgctgttcggagaggagacttttggctggcaagcatacttaagtgg
gaattaggagagtatcatcagtcaattcttgctatggctggaagtctagagaaccctgct
aatgggagctctactgttacttcaaatcacatctcttttgtggatcctagtattggatta
tactgtctcatgttgactacaaaaaatagtctgaagaatgcagtgggggaaagaaatgct
tcaaaccttagtagatgggcaaccttgatgactgctaccgccttcagcagatgtgggctt
ccgctcgaggcgttagaatgtctttcagcatctgccagcggtcatggtggtacgcatcag
gctagcggtcaaagtaatggacatttgggtactccacgtggtgttcttgagctttctgat
cctaattctaattgggtgtcaagcggtgtttcatctactgtggacactcgttttaaactg
agtctagccgcccattccctctcaaagctattaagggaagcaactgcactattaaggagt
tctgaaattgttttgtgtgagaaactctctggatttcaacataagctacaaacatctttg
gagctattttaccagaggttttctttatcttcatctttcctacgtaatacgatgagtatg
tcagcatacaacagtgggttactactatccatgggatacaatgtatttcaggaaaatagt
tcctcaggacgctcactaaataagtcccagacaaatgaagatctcctccaatattcagct
ttgtgtaaattgattctaaaagcgaccgaagagaactcgtttatattgtcacgtatcatt
gctgcatgcagtgtcacttgctttcactcagtgccatgcttagaggaaaacaaggtgtca
tctggacctgagccaaagttgtctaatgctttacgattttactttcagggcattctgcaa
tccttctctagttttgaaactactataaggctgtgcttgaactcctctttggaagacgtg
aaaacaagactcgccgttgttcttgatttagtcgaatattgctcaagactcgcaatggct
tggatcctaggggatgtagactgtctctttcgaatggtgcagcctttgacgatatcatat
tttcatggacatatgccttacgaggtcgacctggaaagcctgaagagagtgtaccaccaa
gaagtttctgttagtgttccagatgcgtcagatgcaggacttaattctattgttgagaac
aacgaagttggatacccagtgagctcaattccaggagatgaaaggcgtcttgtaacacaa
gcatgtttctggaggcatgtttcggactttgtgaaacataagatggtatcgacttcgatt
gatctagatgatggtatctcgaatagtgaatcctcagagaaatttgatgctcagacatcg
ttcgattctagtggtgacattgtatgtgtaactgagaagatcatgtccgttctgggaaaa
acactggttagcaccatagctcaactgtcttcctaccatgtaaaacaacttgtactgtcc
ttgaaacagaaattagagaagagaattcaggttcctaccttgttatggttgcacggatgt
cgggaatctcaggcaaattttattaatcgagctatcccagattcaagtacagagaatgaa
gacaacagcgaccttgcagtttctgtgaggttttggacactttgcgttgatcctcattta
gtactcgaagctttcttgctagaaaattttgacatatctgaatggtcaaaacttaaacca
ttggaagattggagcaatatgtacagagaaataaaggggaagaatgagctcaatgtgcca
tgcaatcaagatggtctgagtagtaatgaagtggcttcacttgcaaaccacgcttctaat
tcttcgcagaaaactgcaactgccagtgaaaattctgctttccaggaccccaaagaaatc
cataagaggaccggggagcttatacaggccatttgtatcaatgccatcaaccatcggcaa
gctgcactagctagcaaccgcaagggtataattttctttaaccaagaagatggtggtcct
tgctatgatcagtcaaactatatttggtcagatgctgattggccacgtaatggttgggct
aactctgagtcaacccctgttccaacatgtgtctcactcggtgttggtcttggggacaaa
aaaggagcacaccttgggttaggtggggccactgttggtgatttttctctttccaagcca
tggaaatctcacagggttccggcttacactgggttaggagtctctggtctaggttggcaa
actcaagaagattttgagcagtttattgatcctcccccaacagttgaaactgttattgca
agcgcattctctagtcacccaacaatgcctctcttcttggttggctcaagcaacactcac
atttacttgtgggagtttggaaaagacagagctactgcaacttacggtgtcctgcctgct
gcaaatgttcctcctccatatgctttggcgtcaatatcagcagttcaattcggtccatgc
ggacacagatttgctagcgctgcacttgatggaacggtatgcacctggcaatcagaagtt
ggaggaagaagcaatgtctatcctgttgagtcatctatttgcttcaatggctttgcatca
gatgtgaaatatattagttcgagtggatctatagttgcagcttcaggatatagctcaagt
ggtgccaacgtagttgtatgggatactctagctcccccttcaacctcccaggcatctatc
agttgtcatgaaggtggtgcacgctcaatctcggtgtttgataatgacattggtagtggc
tcgatttctccaatgattgtaacgnntggcaaaaacaagaagcagaggaacgctgacgga
agatcttctactgacggagatcagaacaagaatgggatgctttggtatataccaaaggct
cacttagggagtgtgaccaagatatcgacaataccacggacaagtctgttcttgacagga
agcaaagacggagatgtgaaactttgggatgcaaaagcagcaaagatgattcatcactgg
cctaaactacacgaaaggcacacttttctgcagccaaactctagaggctacggtggaatc
atccgagctggggtgacagacatacaagtttgtccgaatggattcatcacttgtggtggt
gatggcactgtgaagttcgtcagcctcagaaattcctaa
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integrated database retrieval system
