KEGG   Brassica rapa (field mustard): 103866560
Entry
103866560         CDS       T03449                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein isoform X1
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103866560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:brp03041]
    103866560
Spliceosome [BR:brp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    103866560
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta EIF3I Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_Aladin Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_WDR41 WDR90_beta-prop_4th Beta-prop_SCAP ANAPC4_WD40 Beta-prop_DCAF4 PRP4 Beta-prop_SPT8 WD40_like Nbas_N STELLO
Other DBs
NCBI-GeneID: 103866560
NCBI-ProteinID: XP_009142746
UniProt: M4CK91
LinkDB
Position
A05:complement(1295175..1297709)
AA seq 489 aa
MVRHPPLARPRAFRPPQNGGAKADDERYVISEESRQVRERQERAMQELLRKRRAAAMAVP
TNDKSVRGRLRRLGDAITLFGEREMERRARLAQLMARLDIGGELDRLLRAYEEEVEDEEE
EEVQYLFFTEGPKELREARIDIAKYSIKRAALRVQRAKRRRDDPDEDVDAETEWALKQAK
GMVLDCSSFGDDRPLTGCSFSRDGTILATCSLSGVTNLWEMPQVTNKIAVLKDHKERVTD
VVFSPVDDCLATASADRTAKLWKTDGTLLQTFEGHLDRLARVAFHPSGKYLGTTSFDKTW
RLWDVNTGAELLLQEGHSRSVYGIAFQQEGALAASSGLDSLARVWDLRTGRSILAFQGHI
KPVLSVNFSPNGYHLASGGEDSQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLAT
ASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTNNSNEEE
GGETMDIDL
NT seq 1470 nt   +upstreamnt  +downstreamnt
atggttcgacaccctccacttgcacgcccacgtgctttcaggccaccacaaaacggtgga
gccaaagcagatgatgagcgttacgtgatatctgaagagagcaggcaagtcagggaaaga
caagaaagggcaatgcaggagttgctgagaaagcgccgcgctgctgctatggcagtgccg
acgaacgacaaatccgttagaggccggcttagacggcttggggatgccattactctattt
ggagaacgggagatggagaggagagctaggctggctcagcttatggctaggctcgatatc
ggcggggagttggatagactgcttagagcttacgaagaggaagtggaagatgaagaagaa
gaagaagttcagtacctttttttcactgaggggccaaaggagcttagagaggctagaata
gacattgctaaatattctatcaagagagctgctttgagggttcagcgtgcgaagaggagg
agggatgatcctgatgaggatgtggatgcagagacggagtgggctttgaagcaggctaaa
ggcatggtccttgattgcagtagctttggagatgatcgtcctcttactggctgctccttc
tcaagagatggaacaatacttgccacgtgttctctaagtggagttactaacttatgggag
atgcctcaagttacaaacaagatcgctgtcttgaaagatcacaaagagcgtgtaactgat
gtagtcttctcccctgtggacgattgcctagcaaccgcttctgctgaccgaaccgcaaag
ctgtggaaaaccgatggaacgctcctacaaacgtttgaaggtcatttggaccgtcttgca
cgcgttgccttccacccatcggggaagtacctcgggacgacgagctttgacaaaacatgg
aggctgtgggatgtaaacacaggagcagagctgcttttgcaagaaggtcacagtcgcagc
gtctacggaattgcgtttcagcaggagggggcattagcagcttcctctgggcttgattcg
cttgcacgggtttgggatctccgcactggtaggagtattctggccttccaaggacacatc
aaaccggttctctcggtgaacttctctccgaatgggtatcacttagcatctggtggtgag
gatagtcaatgccgtatatgggatttaagaatgagaaagtcattgtacattataccagct
catgctaacctcgtgtctcaagtgaagtatgaaccacaagaaggctacttcctggccact
gcatcatacgatatgaaagtcaatatatggtcaggcagagatttctcgcttgttaaaagc
ttagcaggacacgagtcaaaagtcgcctctctagatatcactgcagatagctcgtgtatc
gcaactgtgtcacatgaccgtaccatcaagctctggacaaacaatagcaacgaagaagaa
ggcggagaaacaatggacatagatctctag

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