Brassica rapa (field mustard): 103867279
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Entry
103867279 CDS
T03449
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103867279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103867279
03019 Messenger RNA biogenesis [BR:
brp03019
]
103867279
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103867279
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103867279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
103867279
NCBI-ProteinID:
XP_009143582
LinkDB
All DBs
Position
A05:4577839..4582688
Genome browser
AA seq
943 aa
AA seq
DB search
MENSRRPFDRSRDPGPIKKPRLSDEPIRPVNSNARQFPSQRPVATAVGALPASSRFRAGG
GGGGGREAESSSEAYEPQLVHPHYELVNQYKSALSELTFNSKPIITNLTIIAGENVHAAK
AVVSTICNNIIEVPSDQKLPTLYLLDSIVKNIGRDYIKYFAARLPEVFVKAYRQVDPPMR
SNMRHLFGTWKGVFHPQILQQIEKELGFNAKSDGPAAAVTTGRTDLQSQRPQNSIHVNPK
YLERQRLQQSGRTKVMITDVPEIVSNLTRDPDRLERVSSTASGGLWAGPAKVNTIRQPQK
DSLSEPLYEKDMESISEEYEYASDLPHNSRSVVKKVGPRITEDGSGKQWYEAMSRGPDLI
SDQREGLHTKSRVSNYATARLENSESSGPSRNIGVPYDSWKNSEEEEFMWDMHSRVSETD
VATINPKIEFQASDESERLESKNHLLKRPRYSAVDPRLDPVNSYSREQKDSSILGPWTSS
PRSLHDSEVFPSISAASNAARKGIQPQSRIASSGILPISGPVSDKQSKQNVSKQDSGRAH
SLTQRDPRASRFPAKSQSDSVRPLSSSSQFKNTNTLELPDSSQVEKFDSKSTAENARGQA
NMNDLLAAVMKSGILSNNATCGGSKEEMSQNGADPRALTLSAVSKDKTLPTSVAGAVSLT
GVTSAQASKENSKASDPISSLLSSLVSKGLISASKPEPPASKTELPSLAQCAAPSVSQDH
SPDHSTSSSMSVVPSDAQPVVLVKKSLSTASKVAPVETAKPEPENLIGLKFRADKIRELH
PSVISSLFDDLPHLCISCGVRLKQKEELDRHMEELHDKKKLELNGTNSKCRVWFPKADDW
IAAKSGELEPEYEEDLSEPESAAENGPAIAADENQSACILCGEMFEEYFSQEVDQWMFKG
ASYLTIPPDESEANGPIVHAACLTKSSLPGLGVGNAIKQEMVE
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcgcgtagaccgtttgatagatcgagagatccggggccgattaagaaaccc
aggctcagcgatgaaccaatccgtcccgtgaattccaacgcgcggcagtttccgtcgcag
agaccagtcgctacggcggtgggagctctaccggcgtcgtcaaggtttcgagctggcggt
ggtggtggtggtgggagagaagcggagagtagtagcgaggcgtatgagccgcaactggtt
catccgcattacgagcttgtgaatcagtataagtcggcgttatccgagcttacgttcaac
tcgaagccgataattacgaacctcacgataatcgctggggagaatgttcatgctgcgaag
gccgtcgtgtccaccatttgcaataacatcatagaggtaccaagtgatcagaagctgcca
acgttgtacctgttggacagcattgtgaagaacattggaagagattacattaagtacttt
gctgccaggctgcctgaggtatttgttaaggcttacagacaagttgaccctcctatgcgt
tctaacatgcggcatctttttggaacctggaaaggagtctttcatccgcaaatacttcag
caaattgagaaagaacttggctttaatgctaaaagtgatggcccagcagctgctgttacc
actggcagaactgatctgcaatctcagcgaccacaaaatagcattcatgtgaatcccaaa
tatctagaaaggcaacgccttcaacagtcagggcggacaaaagtaatgattacggatgtc
cctgagatcgtatccaatttgactcgggatccagatagactggagagagtttcaagcaca
gcatctggaggcttgtgggcaggtccagctaaagtgaataccattcgacaacctcaaaaa
gactcactcagtgaacccctctacgagaaggatatggagtcaatatcagaggaatatgaa
tatgcttctgatctaccgcataattctagatcagtggttaagaaagttggtcctaggatt
actgaagatgggagtggaaaacaatggtacgaagctatgagcaggggtcctgatctgatt
tccgaccagagggaagggttacacaccaaaagcagagtttctaactacgctactgcgaga
cttgaaaattcggaatcaagtggtcccagtagaaatataggcgtgccttatgatagttgg
aaaaactctgaggaagaagagtttatgtgggacatgcattcaagggtatccgaaacagat
gtggcgactatcaacccgaagattgagtttcaggcttcagatgaatcagagagactggaa
tctaaaaatcacctcttaaaacggccaaggtattcagctgtcgatccaaggcttgatccg
gtgaattcttattccagagagcaaaaagattcaagtattcttggcccctggacgtcttct
cctagatctttgcatgattcagaagtttttccttctattagtgcagcctcaaatgcagct
agaaagggaattcagcctcaatctaggattgctagctctggaatcttgccaatctcagga
cctgtgtcagataaacaatcgaaacagaatgtgagtaagcaagattctggaagagctcac
tccctcactcaacgtgatcctagggcttcccggtttccagcaaaatctcaaagtgactcc
gtgcggcccttatcttcaagtagccagtttaagaacacgaatacgcttgaactacccgat
tcatctcaagttgaaaagtttgactctaagtcaacagctgaaaatgctcgaggacaagcc
aacatgaatgatttgttggcagctgtcatgaagagtggaatcctttctaataatgcaact
tgtggtggaagcaaggaggagatgtctcaaaacggggctgacccaagggcactaaccctg
tcagcagtatctaaggataagactttgccaacttcagtggctggcgcagtgtctcttact
ggtgtcacatcagcacaggcatcaaaagagaatagtaaggcctcagatcctatttcgtcc
ctcttgagctccttagtttcaaagggcttgatatctgcttcaaagccggagccgccagct
tcaaagacggagctgccatctctcgctcaatgtgcggctccttccgtttcacaggaccat
agtcctgatcattctacaagtagttctatgtctgtggttccatcagatgctcagccagtg
gttttggtgaagaagagtctttccactgcctcgaaggtagcaccagtggaaacagcaaaa
ccggaacctgaaaacctcataggattgaagttcagagcagataaaatccgtgaacttcac
ccctcggtgatcagtagtctttttgatgaccttccacacctctgcatctcctgtggcgtt
cgccttaagcaaaaagaagaacttgacaggcacatggaggagctgcacgataagaagaag
ctcgagttaaatggcacgaacagtaaatgtagggtttggtttccaaaggctgatgactgg
atagcagcgaaatctggagagcttgaacctgaatatgaggaagatctgagtgaacccgag
agtgcagctgagaatggtccagccatagctgctgatgagaaccagagcgcatgtatatta
tgtggagagatgtttgaggaatatttcagtcaagaagtggatcaatggatgttcaaagga
gcttcttaccttaccattcctccggacgagagtgaggccaatggaccgatcgtccatgca
gcttgtttgaccaagagttctttaccgggcttgggagttgggaatgcaatcaaacaggaa
atggttgagtag
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