Brassica rapa (field mustard): 103867932
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Entry
103867932 CDS
T03449
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103867932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103867932
03012 Translation factors [BR:
brp03012
]
103867932
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103867932
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103867932
Translation factors [BR:
brp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103867932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
DEAD
Helicase_C
HA2_C
HA2_N
AAA_22
Ank_2
nSTAND3
AAA_19
Ank_5
ATPase
AAA_7
Sigma54_activat
T2SSE
AAA_11
Rad17
NPHP3_N
Myosin_head
AAA_16
Motif
Other DBs
NCBI-GeneID:
103867932
NCBI-ProteinID:
XP_009144273
LinkDB
All DBs
Position
A05:7685628..7691452
Genome browser
AA seq
1250 aa
AA seq
DB search
MGNKRSTSENAAGEQPSVKATRIWASKVIQDFRASANEAYTFEHNLSNSERRVIHLMCRK
MGLRSKSSGRGDQRCLSIYKRSHKNGWKSNREKLRCVSFPPGADAILQDLFTHYPPCDGD
AAETSFNKYVGRSGKQGRWRDDDFFRKPQISCDEIVEKAASLSSRLRKDKALQEISKLRS
KLPIASFRDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSAKKETCKIVCTQPRR
ISAMSVSERISCERGESIGDNIGYKVRLQSKGGRRSSVVFCTNGILLRVLVGKGSVSYVS
DITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFGGCPVVRV
PGFTYPVRSLYLEDVLSILKSGGDNNNLCSTNLSIPVQNLTDEDKLALDEAIILAWTNDE
FDALLDLVSSQGSPQVFNYQHQSTGLTPLMVFAGKGRISDVCMLLSFGADSILKSKDGMT
ALELAEAENQPEAAQIIREHAENSQSNSQQAQQLLDKYMATINPEQVDVSLILQLVRKIC
GDSEDCGGAVLVFLPGWDDINKTRQRLLDSPFFKDSSKFDIICLHSMVPAGEQKKVFSRP
PRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPHNNVSTLQSSWVSKANAKQRE
GRAGRCQPGICYHLYSRLRAASMPEFKVPEIKRMPVEELCLQVKILDPNCKANDFLQKLL
DPPVDQSIANALSILQNIGALTPEEELTELGEKFGHLPVHPLISKMLFFAVLVNCLDPAL
TLACAADYKEPFTMPMSPVERQKAAAAKLELASLCGGDSDHLAVVAAFECWKNAKEKGLL
AEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPSDISSCSQNSSDPGILRAVLAVGLY
PMVGRLCPSFGKNRRSIVETASGAKVRVHSLSNNFNLSSREYDESLVVFDEITRGDGGMH
IRNCTVARDLPLLLISTEIAVAPIESSDVDDSEEEEEEEEGDSSNEERININKVESRGGE
KVMSSPENSVKLVVDRWLPFKTTALEVAQMYILRERLTASILFKVRHPRENLPPHLGASM
HAIACILSYDGHAGLSSKHSKTEMYETGGREEKPNSFLSSLFWSPSLKETKPSSRKRKRN
RQHGFNTAPTEASSMPRQQSNNQRKPESANSLVSGNKKENKPSDQVCGNQQPNTAPREAA
VSIAKNQSSKKSKTRSGNKSDSGKKKGVDVPKIDLHKMQREEKTKLKGNS
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atggggaacaagaggtccacgtctgaaaatgcagctggcgagcaaccttccgtcaaagca
actaggatttgggcttctaaggtcatccaagactttcgagcctccgctaacgaagcttac
acgtttgagcataatctttcaaacagcgaacgtagagtcattcatctgatgtgtcggaaa
atgggtcttcgatccaaaagttctgggcgtggggatcaaaggtgtctttccatatacaaa
aggagtcacaagaatggatggaagtcaaacagagagaagctcagatgtgtctcgtttccg
ccaggggctgatgctattctgcaggacttgtttactcactatccaccttgtgacggagac
gctgctgaaacgtcgtttaacaagtatgtaggtcgttcaggtaaacaagggcgatggaga
gatgatgactttttccggaagccacagattagttgtgacgagattgtagaaaaggcggcg
tctttgagttctaggctaaggaaagataaagctctccaagagatctctaagctgcggtca
aagcttcccattgcatcatttagagacgcaattacctctgctgttgaatccaaccaggtt
attctcatttctggtgaaactggttgcgggaaaactactcaggtgcctcaatatctttta
gaccatatgtggtcagccaaaaaagagacttgcaaaattgtttgcacccaacctcgtcgt
atctctgccatgtcagtttctgaaagaatatcctgtgaaagaggtgaaagcattggagac
aacattggttacaaggttagactgcagagcaaaggtggaaggcgctcatcagttgttttc
tgcaccaatggcattctcctgagggtgcttgtaggcaagggctctgttagctatgtttcc
gacataactcacatcattgtggatgaaatccatgaaagggattgctactccgatttcatg
ttggcaattataagggacttgcttccatcaaatcctcatctccgtctgattctaatgagt
gctacgcttgatgctgagagattttctggatattttggaggttgccctgttgtccgtgtc
cctggattcacttatccagtgagaagcttatatctggaggatgtgctctctattcttaaa
tcaggtggagataataacaatctatgctctaccaacttgagtataccggtccagaacttg
actgatgaagataaacttgctttagacgaagcaatcatcttggcttggacaaatgatgag
ttcgatgccctcttagatctagtttcttctcagggaagtccacaggtcttcaactatcag
caccaatcaactgggctaacaccacttatggtctttgctggaaagggaaggatcagcgat
gtctgcatgctcctctcatttggcgcagactcgatattaaagtctaaagatggtatgaca
gcgttagaactggccgaagcagagaatcagccagaggctgctcaaatcatcagggagcat
gctgaaaattcacagtctaactctcagcaagcacaacagttacttgataagtacatggcg
acaatcaatccggagcaggtcgatgtgagtcttatactccagctagtaaggaagatatgt
ggtgattcagaagattgtggtggtgctgttcttgtttttctacctggttgggatgatata
aacaaaacaagacagagactacttgatagcccttttttcaaagatagcagtaaattcgac
atcatatgtcttcactcaatggttccagcaggggaacagaagaaagtatttagccgccct
ccacgaggttgccgcaagattgtgcttgcgactaatattgctgaatcagcagttaccatt
gatgatgtggtttatgtgatagatagtggccggatgaaggagaagagctatgatcctcac
aataacgtttcaactcttcaatcttcttgggtctccaaagcaaatgctaaacagcgtgag
ggtcgagcaggccgttgccaacctggcatttgttatcatctctattctagacttcgtgca
gcctctatgccggagtttaaagttcctgagattaagaggatgcctgtagaagaactctgc
ttacaggttaagatacttgatccaaattgtaaagcaaatgatttccttcagaagttgttg
gacccgcctgttgatcaaagcattgcaaacgccttgagcatcctacagaacatcggggcc
ctgacacctgaggaagagctgacagaactcggagagaagtttggtcatctcccggttcat
cctcttataagcaaaatgcttttcttcgctgtattagtaaactgtctggatccagcactt
acactggcgtgtgcagccgactacaaggaaccgtttacaatgcctatgtcgcccgttgaa
agacagaaagctgctgctgcgaaacttgagctcgcgtcgctctgtggcggtgacagcgat
cacctagcggttgttgccgcctttgaatgctggaaaaacgctaaagaaaaaggtcttttg
gctgagttttgctctcagtactttgtctccccaagtgctatgaagatgttggatcagatg
cgtagccagcttgagtcggaacttaaaagacacgggattattccaagcgacatctcgagt
tgtagccagaactccagtgatccgggtatactccgtgccgtcctagcggtaggattgtat
cctatggttggaagactgtgcccatcttttggtaaaaatagaagatctatagtagagact
gcgagtggtgccaaagtccgtgtgcattcgctttccaacaacttcaacttgtcgtcgagg
gagtatgatgaatctttagttgtgttcgatgagatcacacgtggagatggaggcatgcac
ataagaaactgcaccgttgctcgcgatcttcctttgttgctgatctcaacagagatagct
gtagctcctatagagagtagtgatgttgatgatagtgaggaagaagaagaagaagaagaa
ggagattctagtaatgaagagaggatcaatataaataaagtagagagtaggggtggtgag
aaagtgatgtcttcgcctgaaaattcagtcaagttggtagttgatcggtggctgcctttc
aaaaccacagcccttgaagttgctcaaatgtacattttgcgtgaacgactaacggcgtcc
atcttgttcaaagtgagacatccacgggagaatttgccgcctcatcttggagcttctatg
catgcaatagcttgtattctctcatatgatggccatgcgggactttcatcaaaacattcg
aagactgagatgtatgaaactggtggaagggaggagaaaccgaactctttccttagctct
ctcttttggtctccgagtctgaaagagactaagccttcttctagaaagaggaaaaggaat
cgacagcatggcttcaacacggctccaacagaagcttcatcgatgcctaggcagcaaagc
aataatcagagaaagcctgaatcagccaacagtttggtttcgggtaacaagaaagagaac
aagccttctgatcaggtctgtgggaatcaacaaccaaacacagctccgagagaagctgct
gtatcaatagctaagaatcaaagcagcaagaaaagcaagacaaggtcaggcaacaagtcg
gattcgggtaagaagaaaggcgtggatgttccaaagattgatctccataaaatgcaacgc
gaggaaaaaacaaagctgaagggaaattcatga
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