Brassica rapa (field mustard): 103868089
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Entry
103868089 CDS
T03449
Name
(RefSeq) DNA polymerase lambda isoform X4
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03410
Base excision repair
brp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
103868089
03450 Non-homologous end-joining
103868089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brp03400
]
103868089
Enzymes [BR:
brp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
103868089
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
103868089
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
103868089
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
DNA_pol_B_thumb
HHH_8
HHH_5
NTP_transf_2
BRCT
Cdd1
DUF3859
Motif
Other DBs
NCBI-GeneID:
103868089
NCBI-ProteinID:
XP_009144435
UniProt:
M4DPJ3
LinkDB
All DBs
Position
A8
Genome browser
AA seq
524 aa
AA seq
DB search
MAPKRGRNRSPSPDRNGMFTGMVVFMVDTGVQRRRLQIWKQKLVLMGGAVIEEGSLTKKV
THVLAMTPEALVGKFQKEPLSRFKGRLVRYQWLEDSLTSGEKANEDLYLLKFEEPNKKSL
PSRSGSEDQPSTPKRARNSPDSSDTVGLESQKNTQGSPTSCSVPSTSPSPGEGISETPST
SPQSEPTSVYKPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKAIPVIEKFPTKIESVD
QLKHLPGIGKSLTDHIQEIVTTGKLSKLEHFETDEKVRTISLFGEVWGIGPATALKLYEK
GHRTLDDLKNEDSLTHAQRLGLKYFDDIRTRIPRQEVQEMEQLLQRVGEEVLPGVDIVCG
GSYRRGKATCGDLDIVITHPDGQSHKGFLTKFVKRLKETNFLREDLIFSTHSEEGTGSGV
DTYFGLCTYPGQELRRRIDLKVYPRDIHAFGFIAWTGNDVLNRRLRLLAESKGYRLDDTG
LFPATHSSSGNRGGRASASMKLSTEKQVFDFLGFPWLEPHERNL
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaaagcgagggagaaaccggtcgccttctccggaccggaacgggatgttcacc
ggaatggtagttttcatggtggacaccggagtccagcgccgtcgattgcagatatggaag
cagaagctggttctaatgggaggagcagtgatcgaggaaggttcgttgacgaagaaagtc
actcatgttctcgccatgactcccgaagctcttgtcggaaaattccagaaagaacctctg
tctcgttttaaaggacgccttgtgcgttaccagtggttagaagatagtctaacttcagga
gagaaggctaatgaagacttgtaccttctcaaatttgaagagcctaacaaaaagtctttg
ccttcaaggagtggtagtgaggatcaaccatcaactccaaaaagagctaggaactcccct
gattcttctgataccgtaggcttagaaagccaaaagaatacacaaggatcacctactagt
tgtagtgttccctctactagtcccagtcctggagaaggcatttcagagactccctctact
agtccacaatcagagcccacgtcggtttacaaaccgcccgatttgaacagaaatatcact
gagatatttgggaagctgataaacatatatagagctttgggtgacgataggaggtccttt
agctattacaaagctataccggtcattgaaaagtttcccactaagattgaaagcgttgat
cagctcaaacacctccctgggattggaaagtcattgacagatcatattcaagaaatcgtg
acaacagggaagttatccaagttagaacactttgaaacagatgagaaggtacgtacgatc
agtttgtttggggaagtttggggtattggtcctgctactgcactcaagctatatgagaaa
ggacaccgcacattagatgacttgaagaacgaggattcacttacgcatgcgcagaggttg
gggttgaaatattttgatgatattagaacaaggattccacgccaggaggtgcaagaaatg
gaacagcttctacagagagtcggcgaggaagttttacctggtgtggatattgtatgtgga
ggatcatatagacgtgggaaggctacttgcggagatctagatatagttatcacacatcct
gatggacaaagtcacaagggcttcttgacaaagtttgtaaagcgtttgaaggaaacaaac
tttcttagagaagatctcatcttcagtacccacagtgaagagggtactggttcaggcgtc
gacacgtattttggtctgtgcacttatcctggtcaggagctgaggcgccgtattgattta
aaggtttatccgagggatatacatgcattcggattcatagcctggacagggaacgacgtg
ttgaacagaaggctgagattgctagcagaatctaaaggatatagactcgatgatactgga
ctgttcccagctactcacagctcaagtggtaaccggggtggtagagcaagtgccagcatg
aaactctccacagagaaacaagttttcgatttcttagggtttccctggctcgagccacac
gagaggaatctttaa
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