Brassica rapa (field mustard): 103868966
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Entry
103868966 CDS
T03449
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03022
Basal transcription factors
brp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103868966
09124 Replication and repair
03420 Nucleotide excision repair
103868966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103868966
03400 DNA repair and recombination proteins [BR:
brp03400
]
103868966
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103868966
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103868966
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
103868966
NCBI-ProteinID:
XP_009145261
UniProt:
M4FG79
LinkDB
All DBs
Position
A01:10427437..10430661
Genome browser
AA seq
452 aa
AA seq
DB search
MPQVKIIAKNFMDMVASLTAIKLDKLYNNVFICEAILRSLPPLAKKYVLQLLFIDDPVPC
TRIEEWVLPDGLSKHRVAIDRLIQLRIFTETVDRREGTCFSLNPTFQNNLQKHIISGGVL
PREPMNSSNGIKLPSLQELETYALQQWECFLLQLINSGQGEKLTGISSSMMKVFQRGLLS
QRDRDGPRLTESGFQFLLMDTNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE
AYNLNTLTDVQRTTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSVRKEGYVM
METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAVTKESLYNAFDNGITSDQIITFL
QQNSHPRCADRVPSIPENVTDQIRLWESDLKRIEMTQAHFYDEFPSKDVFEGACNFARQW
GGLLWEDSKRMRLVVKSEVHNQMREYLHTQGN
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagttaagatcatcgcgaaaaacttcatggacatggtggcctctcttaccgcc
atcaagctcgacaaactctacaacaatgtcttcatctgcgaggccattctcaggtctctg
ccgcctctcgccaagaaatacgtattgcagttgcttttcatagatgatcctgtaccttgc
acgaggattgaggagtgggtgcttcctgatggcctctctaagcatagagttgctatagac
cgcttgattcaactcaggatttttactgaaaccgtagataggagagagggaacctgtttc
agcctaaatcctacatttcagaacaatcttcagaaacatattatctccgggggagttttg
cctcgggagcctatgaactccagcaatggcattaagcttccaagtctacaagaactcgaa
acctatgcactccagcaatgggagtgttttctgctacaactcataaattcgggtcaaggt
gagaagctaaccggcatcagttcgtccatgatgaaagtcttccagcgaggtttattgagt
cagcgagacagagatggcccgagattaactgagagtggctttcagtttttgctgatggat
acaaatgcccagctttggtacattatccgagaatacatatcgaatgccgaggagcgagat
gtagatccagcggacttgatttcgtttttgttagagctcagtttccacgttaccggtgag
gcgtataacttaaataccttgacagatgttcaaagaactacacttaaggaccttgcagac
ttgggattagtcaagcttcaacagggaaggaaagacagttggtttattcctactaagttg
gctacaaatttatcagtcagtcttgcagattcatcagtccgaaaagagggatatgtcatg
atggaaacaaacttcaggatgtatgcttactcaacatctaagctacaatgtgagatatta
cgtctgtttgcgaggatagagtatcaacttccgaaccttattgcttgtgcagttacaaaa
gaaagtttgtacaatgcatttgacaatggcatcacatcagaccagattataacttttctc
cagcaaaattctcatccacgatgtgccgatcgagtcccgtctattccagaaaatgtcacc
gaccagatccggctttgggagtcagatctgaagagaatcgagatgactcaggctcacttc
tatgatgaatttccttcaaaggatgtgtttgaaggagcttgcaactttgctagacagtgg
ggaggccttctttgggaagactctaagagaatgcgacttgttgtgaaatccgaagttcac
aatcagatgcgtgagtatcttcacacccaaggcaattga
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