Brassica rapa (field mustard): 103869095
Help
Entry
103869095 CDS
T03449
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103869095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103869095
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103869095
mRNA degradation factors
5'-3' decay
Decapping complex
103869095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
103869095
NCBI-ProteinID:
XP_018514767
UniProt:
A0A397ZAJ0
LinkDB
All DBs
Position
A05:complement(18751373..18755291)
Genome browser
AA seq
785 aa
AA seq
DB search
MERSDSRDLYNFVRSSSDSNSKLFDASQYEFFGQNLDEMSLGGIDDDDVVAPVLGHSATD
DDDEYHLFNKGGEGAGLGSLSDMDDLATTFAKLNRNVTGPKPLGVIGDRGSGSFSRESSS
ATDWTHDTELTNWLDEQDQEANRWSSQPQSSAHSQPLYRTSSYPQQPPPLQHYNSEPIIV
PESTFTSFPPPGSRSQQTSPGSLHRAPSLPTGSQMNFTAPSPLSNSRFHLSGPSHGPHYG
GNLARYASCGPTLGNVVQPHWATDPGLLHGDHSGLLHSLAQQQQLPPRNDLMSQHMMALQ
QRQSYAQLAALQSQLYRSYPSPSRKVSFGGGEVREQHKHKSSHRSRKNKGISQQASDAAS
QKSESGLQFRSKYMTSEEIESILKMQHSNSHSNDPYVNDYYHQARLAKKSSGSRAITHFY
PSQLKDHHHQPKSRNNSSEQHQQQVHVDALGKITLPYIRRPRALLEVDSSSPGLNDQKGS
GKHLEQEPLVAARVTIEDALGVLIDIVDIDRTLQSTRPQDGGAQVKRKRQILLEGLATAF
QLADPFSKTGQKSGLTAKDDVVFLRIATLPKGRKMLTKYIQLLVPGTEITRAVCMAIFRH
LRFLFGGLPSDTLAAETIANLAKTVTVCVQAMDLRALSACLAAVVCSSEQPPLRPIGSSS
GDGASVVLISLLERAAEVVVVPRAVHGSSNDGLWRASFNEFFNLLTKYCRSKYETIRSQN
QGSAADVLELAIKREMPAELLRASLRHTNDDQRNYLLNFGRKPSAVSESASHARGGQINS
ESVMG
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccgattccagggacctgtacaactttgttcgctcttcctcagattcaaat
agtaagctctttgatgcatctcagtatgagttttttgggcaaaatcttgacgaaatgtca
ttgggaggtattgacgatgacgatgtggtcgctcctgttcttggacattctgctactgat
gatgatgatgagtatcacttgtttaataaaggaggagagggtgcaggtttagggtcatta
tctgacatggatgatcttgccacgacttttgcaaagctaaatagaaatgtcacgggaccc
aaaccccttggagttattggtgacagaggatctggttccttttcaagagagagttcttct
gccaccgattggactcacgatacagagctcacaaactggttggacgagcaagatcaagag
gctaacagatggtcctcgcagccacagtcatctgctcattcacaacctttatacaggaca
tcctcttaccctcagcagccaccaccgttgcaacactacaatagtgaaccgatcattgta
ccagaatcaactttcacctcctttcccccgccaggcagcagatctcagcagacttcacct
ggaagcctccaccgcgctccttctcttcccaccggttctcagatgaatttcaccgcacct
tccccgctgtcaaactctagatttcatctttcaggaccctcacacgggcctcactatggt
ggtaatttggctagatatgcctcctgtggtcctacccttggtaacgttgtgcaacctcat
tgggccactgatcctggtcttctccacggagatcattctggcttattacatagtctggcg
caacaacaacaattgcctcctcgaaatgatcttatgtcgcaacatatgatggctctccag
cagaggcaatcgtatgctcagcttgcagcgctacagtctcagctgtacaggtcttatcca
tcaccatcacgtaaagtctcttttgggggtggtgaagttagggaacaacacaagcataag
tcttctcataggagtcgaaagaacaaaggcatatctcaacaggcatcagacgcagctagt
cagaaaagcgagagtggattgcagtttagatcaaagtacatgacttcagaggaaatagag
agtatactcaagatgcagcactctaattcacacagcaacgatccttatgtcaatgattat
taccaccaagctcgccttgccaagaagtcttctggatctagagcaatcactcacttctac
ccttctcagttgaaagaccaccaccaccaacctaagtcccgtaataatagttctgaacag
catcaacaacaagttcatgtagatgctcttgggaagatcacgcttccttacattcgcagg
ccacgtgcgttgcttgaggttgactcttcttctcctggtcttaatgatcaaaagggctca
gggaaacatttggagcaggaaccacttgtggcagctagggttacaattgaagatgctctt
ggagttcttatcgacatagttgacattgacaggactctccaatccacaaggccacaggac
ggaggtgctcaggttaagcgaaaacgccagatcctcctagaaggattagcgacagctttt
cagcttgctgatcccttcagcaaaaccgggcagaagtcagggctgactgctaaggatgat
gttgtctttctacgtatagcaactcttccaaagggtcgaaaaatgcttacaaagtacata
cagcttctagttccaggcactgagattactcgagctgtctgtatggctatattccgccac
ttgaggtttctcttcggcggcttgccttcggatactctggcagcagagacgattgctaat
cttgccaagacagtcacggtctgtgttcaagcaatggacctccgagcgctgagtgcttgc
cttgcagctgtggtttgttcttcggagcagccacctctgcgtcctattggaagctcttca
ggggatggtgcttcagttgtgttgatatctcttctcgagagagctgctgaagtagtggtg
gttcctcgagccgtccatgggagctctaatgatggactatggagagcctcgtttaatgag
ttcttcaaccttcttacgaaatactgcaggagcaagtatgagacgatccgtagccagaac
caagggagtgcagcggatgttttggagctggcgataaagagagaaatgcccgctgagctt
ttacgtgcgagcctccgtcataccaatgacgaccagaggaactatttgttaaactttggt
cgtaaaccgtcggccgttagtgagtctgcgtcgcatgcaaggggtggtcagatcaactct
gaatctgtgatgggttga
DBGET
integrated database retrieval system
