Brassica rapa (field mustard): 103869430
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Entry
103869430 CDS
T03449
Name
(RefSeq) pre-mRNA-processing protein 40B
KO
K12821
pre-mRNA-processing factor 40
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103869430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103869430
Spliceosome [BR:
brp03041
]
Complex A
U1 snRNP components
U1 related factors
103869430
Complex B
103869430
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Inhibitor_I66
Motif
Other DBs
NCBI-GeneID:
103869430
NCBI-ProteinID:
XP_009145759
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All DBs
Position
A05:20703441..20712017
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AA seq
993 aa
AA seq
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MANNPHYPGIQPFQHPNASSVDLPRGFAPSMNFQHRPPIQAPQSEQVAHLASQNFQYVGR
GATMNNGFPPQSYTPQLLQSMHHSVERPSQSNQGQHVPLGHPSLISQPNVPVASGTFLPE
PYLRTSDINMNGGPRALFSHQSATPFGHLRAPTQVTGPSSHSQAQQSAPISQANAPSSIM
NPTFEHPKVASSQPIPSQEAATDWVEHTSADGRRYFFNKKTKQSTWEKPVELMTLFERAD
AKTDWKEHSSPDGRKYYYNKVTKQSTWTMPEEMKIAREQAENASVQGLHAEGVVDASKVL
SRSETASTAAPTGLPNQTSSTPPTSDTSEKLALTSDREQAASVPGSSSPVENVDQVQAIA
DKTPELCDTAKTDNPSATVMITSAATLVDKETVSTENSGDADDVSAKNTNQGSGTGPKES
QKHVVDSERVDSQSEGKQIHQENISYTNKSEAVDVFKSLLKSANVGSDWTWEQAMREIIN
DRRYGVLRTLGERKQAFNEFLAQMRKAAEEEKIARQLKRYEDFRRMLEESVELTPSTRWS
KAVTMLEDDERFKVVEREKDRRNIFEDHISDLKEKERVKAFGDRKRNIVEYRRFLESCNF
IKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEERKKIQKEELKKAERK
HRDEFRGLIDEHIATGELTAKSSWRDYLVKVKDLPVYLAIASNSSGATPKELFEDAAEDL
KRKYHELKSQIKDVLKLRKVTLSTESTFDEFKVSVSEGISSPSIPDFKLKLVFDDLLERA
KEKEEKEARKQTRNTEKLVDMLRSFKYITASSSWEDYKHLVEGTEKFRTIGDESFRKKTF
EDYISHLKEQAKRIKQNKKEHVREEHDREKDKYGREKERVRERDNRDHRKQGSADNYNHD
VDELHGKERRRSGRDSHSRHRERHTSVKENEADHYKESHKAGRGHKESRQQRGLVREAED
EGREKRRRKEGDSEQTKRAEKEEELEDGECGRY
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggctaataatccccactatcctggcattcagccattccagcatccgaatgccagttcc
gtagatttaccccgaggctttgctccatccatgaattttcagcatcgtcctcccattcaa
gctccgcagtccgagcaagttgctcatttggcttctcaaaattttcaatatgttgggcga
ggcgcaacgatgaacaatggatttccacctcagtcttatacgcctcagttactacaatca
atgcaccattcggttgaaagacctagccaatcaaatcaggggcaacatgtgccactagga
catccgtctctaatttcacagccaaatgtgccagttgcctctggtaccttcttgccggag
ccttacctacgaacttcagatattaatatgaatggtggccctagggcactcttttctcat
cagagtgccacacctttcggacatctgagggcaccaactcaagtcactggaccaagcagt
catagtcaggcacaacaaagtgcacctatcagccaggctaatgcaccatcttctataatg
aatccaacatttgaacatccaaaggtagcttcttctcaacctataccttctcaagaggct
gcaacagattgggttgagcatacctcggcagatggacggagatattttttcaacaagaag
acgaagcagtccacttgggagaagcctgttgagttgatgactctatttgagagagcagat
gctaaaactgactggaaagaacattcaagtcctgatggaagaaagtattattataataag
gttaccaagcaatcaacatggacaatgcctgaggagatgaagattgctcgtgaacaagca
gaaaatgcatctgttcaagggctgcatgcagaaggcgttgttgatgcttctaaggtgctg
tctcgttctgaaacagcatcgactgcagctcccactggtttaccaaaccaaacatcatct
acgcctccaacatctgataccagtgagaaactagctcttacttctgatcgggagcaggca
gcttcagttcctggaagctcttccccggtcgaaaatgttgatcaagttcaggcaattgca
gataaaacaccagaattgtgtgatactgcaaaaactgataatccttctgccactgtgatg
ataacttctgctgctacattggttgacaaggaaacagtatcaaccgagaacagtggagat
gcagatgacgtgtcagctaaaaacacaaatcaaggtagtgggactggaccaaaagaaagc
caaaaacatgtggtggatagtgaaagagttgacagtcagtcggaaggcaaacagattcat
caagagaatatttcttatacgaacaaatcggaagctgtggatgtcttcaaatcacttttg
aaatctgccaatgttggatctgactggacatgggagcaggccatgagagaaataattaat
gatagaagatacggggttctgaggactcttggagagcggaagcaagccttcaatgagttt
ctagctcaaatgagaaaagcagcagaggaggaaaagatagccagacagctaaaacgatat
gaagattttagaaggatgttagaggaaagcgtggagcttactccttctactcggtggagc
aaggctgtgactatgttggaagacgatgagcgtttcaaagttgttgaacgagaaaaagac
cgtcgtaatatttttgaagatcatatcagtgacttaaaggagaaggagcgggtgaaagct
tttggggatcgcaagcggaacattgttgaatacaggagatttttggaatcttgcaatttc
attaagcctaatagccaatggcgcaaagttcaggaccgtttagaagtggatgaaagatgt
tcacgtcttgagaaaattgatcagctagaaatatttcaggagtatctgcgcgatctggag
agagaagaagaagagagaaagaagatacaaaaggaagaactaaaaaaagcagagcgaaaa
catcgtgatgagttccgtggtctgatagatgaacatattgctacaggagagcttactgcc
aaaagtagttggcgtgattatttagtgaaggtcaaagatttaccagtatatttagcaatt
gcatcgaactcctctggcgctacaccaaaagagttatttgaagatgctgctgaggatttg
aaaagaaagtaccacgagctcaaatctcagataaaggacgtattgaagctgagaaaggta
acgttatccactgaatcaacgtttgatgagttcaaagtctcagtttctgagggtatcagt
tccccatctattcctgactttaaactgaagttagtgtttgatgatttgctggaaagagca
aaggagaaggaagagaaggaagccagaaaacagactcggaatactgaaaaattggtggat
atgcttcgctccttcaagtatataactgcctcttcatcctgggaggattataagcatctt
gttgaaggtactgaaaaattccgtaccataggggacgagagcttccggaagaagacgttc
gaggattacatatcgcacctgaaagaacaggcaaaaaggatcaaacagaacaagaaggaa
catgttagagaggaacatgacagggagaaggataaatacggaagagagaaggagagagtg
agagaaagagacaatagagatcatcgtaagcaaggttcagctgataattacaaccatgac
gtggacgaactccatggaaaagaacgtagaagatccggaagagatagccatagtagacat
cgagaaagacatactagtgtgaaggaaaatgaggcagatcattacaaagaatctcataaa
gctggtcgtggccataaggaatcaagacaacagcgaggtttggttcgggaagccgaggat
gaaggcagggaaaagcggcgtagaaaagaaggagatagtgagcaaacaaagcgtgcggaa
aaggaagaagaacttgaagatggagaatgtggtaggtactaa
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