KEGG   Brassica rapa (field mustard): 103869606
Entry
103869606         CDS       T03449                                 
Name
(RefSeq) target of rapamycin complex subunit LST8-1 isoform X2
  KO
K08266  target of rapamycin complex subunit LST8
Organism
brp  Brassica rapa (field mustard)
Pathway
brp04136  Autophagy - other
brp04142  Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:brp00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    103869606
   04136 Autophagy - other
    103869606
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:brp04131]
    103869606
Membrane trafficking [BR:brp04131]
 Autophagy
  Other autophagy associated proteins
   mTORC1 complex
    103869606
   mTORC2 complex
    103869606
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_Gbeta Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_1st Beta-prop_EIPR1 Beta-prop_WDR41 DSE1_N Beta-prop_WDR75_1st Beta-prop_DCAF4 ANAPC4_WD40 Beta-prop_NOL10_N CFAP251_N WDR90_beta-prop_4th ASA1 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_Aladin Beta-prop_Nup120_160 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_Vps41 NBCH_WD40 Beta-prop_VPS8 Beta-prop_SPT8 Tricorn_2nd PROPPIN Beta-prop_IP5PC_F Beta-prop_NWD2_C Beta-prop_WDR19_1st Beta-prop_NUP159_NUP214 Beta-prop_ACSF4 Beta-prop_SCAP PAC11 eIF2A Beta-prop_WDR35_TULP_N DmsR_N Beta-prop_WDR19_2nd MIOS_WD40
Other DBs
NCBI-GeneID: 103869606
NCBI-ProteinID: XP_009145931
LinkDB
Position
A5
AA seq 305 aa
MSQPCVVLATASYDHTIRFWEAESGRCYRTIQYPDSHVNRLEITPDKRHLAAACNPHIRL
FDVNSNSPQPVMTYDSHTNNVMAVGFQCDGKWMYSGSEDGTVKIWDLRAPGCQREYESVA
AVNTVVLHPNQTELISGDQNGNIRVWDLRANSCSCELVPEVDTPVRSLTVMWDGTMVVAA
NNRGTCYVWRLLRGKQTMTEFEPLHKLQAHNGHILKCLLSPANKYLATASSDKTVKIWNV
DGFKLEKILTGHQRWVWDCVFSVDGEFLVTASSDMTARLWSMPAGKEVKVYQGHHKATVC
CALHD
NT seq 918 nt   +upstreamnt  +downstreamnt
atgagtcagccatgtgtagttctcgcaacagcgagctacgatcacacgatccgattctgg
gaagccgagagcggtcggtgttaccgtaccattcagtatcctgactcgcatgtgaatagg
ctggagataaccccagataagcgtcatctggcagcagcttgtaatcctcatatacgtctc
tttgatgtcaattccaacagccctcaacctgtgatgacttatgattcacacaccaacaat
gttatggcagtggggttccagtgtgatgggaaatggatgtattctggatcagaggatggt
actgttaaaatctgggacttgagggctccaggttgccaaagagagtatgagagtgttgcc
gctgttaacactgttgttttacacccaaatcagactgagttgatatctggagaccaaaac
ggcaatatacgtgtatgggatctcagagcaaattcgtgtagctgtgaactggtaccagaa
gttgatacacctgtacgctctctaacggttatgtgggatgggactatggttgttgctgct
aacaaccgtggaacatgttatgtttggcgcttgttgcgcggaaaacagacgatgacagag
tttgagccacttcataagctgcaagctcataacggccacatccttaaatgcttactctct
cctgcaaacaaatatctagcgactgcatcatctgataaaactgtcaaaatatggaacgtc
gatggtttcaaactagagaaaattttaacaggacaccaaagatgggtatgggactgcgtc
ttctcagtggatggagagtttcttgtaacagcatcatcggacatgacggctaggttgtgg
tctatgccagcgggaaaagaagtcaaggtgtaccaaggtcatcacaaagccaccgtgtgt
tgtgccctccatgattaa

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